Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02484 ATGGAACCTTCATCTTCCACGTCGCTCCCTCCATTGCTTCACATCGTTATGGCGGGGTTGCTCGGAGCCTCCTTCATGGCCATCTCCGCCTTCTACATGCACCGCCGCACCGTCGACCACGTCCTCCACCGACTCGTCGAAATCCGACGCAAGCCACTCGCCGCTTCCAACGATGACAGCGAGGATGACGACGACGATCTTATCGGGCTCGGACACGACGACAGAGGAACAGATAAGGACGCCGATCCGAGGAACTATCTCCGAACCTTTTCGAAGTCCGTGGACGAAACATCAAACGTGCTTCGGAGCTATAGGTTTTCGTCTTCGATGCCAAACGTGGTTTCCGCAGCGGATTGGTTCCCCGAGGACACTAAGAATCGTGCCTCGTCGCTCGAAAATCTTCAATTCGCTCCGCTAGGGCTTCCGTCTAATCGAACGGGTTCCACCAATGGTGAGAGTGCTCAGATTTCGCGTTCGTATAAGAGGATAGCTTCTGTTGGTAGAATTATGACTCCGAGGTCACCAGGGAGAAACGCATTCGAAAGTGCTGGGGATTCTGATGAGGAGGAAACACAGCTTGCTAATGACAATACCATTCCTTTCTCAGATACTTACGGAGTAAATTCAAACATGTGCAATTTGTCTGCTGTTCCATTCAGAGGTGATGATGCAAACTGTGCAAAAAATCAGATGTATGGAGAGGTTTCAAAGGAAGCGAAAACTGGTGCAAATCTGAATGTGGGTTCTTCAACTTCTGTACATGTAGCTGGGGATGACCGTGTGTTTGCCAATAATGTCTCGCCTGCAAGAATCCCTGTGCATGAGACAAATATAGAAGAGGATGAAGTATGCAAAATGATTCAAGAGTGCTTAGATTTGCGTGAGAAGTATGTTTACAAGGAAGATATTGCATTGAGGACAGAACCTGTGGAAACTAACTTTGACCCGTATCATTTTGAACCAGTTGAAGCAACAACACACCACTTTAGGATGGAAGATGGAGTCATTCATGTTTTTGCAAGTAAAACTGATACCAAAGAGCTCTTCCCTGTTGCGAGCTCAACAAGATTTTTTACGGATATGCATTACATTCTAAAAGTTATGTCTATTGGCAACGTTCGCTCTGCATGCTACCACAGGCTACGATTTCTTGAGGAAAAATTCCGCCTTCATCTGTTACTAAATGCAGATAGGGAGTTTCTGGCTCAGAAGGGTGCGCCACATCGGGATTTTTACAATATCAGAAAAGTTGATACTCATATTCATCATTCAGCTTGCATGAATCAGAAGCATCTTGTGCGCTTCATCAAGTCAAAATTAAGAAAAGAACCTGATGAGGTTGTTATCTTTAGAGATGGAAAGTATATGACACTTAAGGAGGTTTTTGAGAGTTTGGATTTGACTGGATATGATCTGAATGTTGATTTGTTGGACGTGCATGCAGATAAGACCACATTCCATAGATTTGACAAATTCAACCTTAAGTATAATCCTTGTGGACAGAGCAGACTAAGAGAGATATTTTTAAAGCAGGATAATCTTATCCAGGGAAGATTTCTTGCTGAAGTAACAAAGGAGGTTTTGATAGATCTTGAAGCAAGCAAATATCAGATGGCTGAGTATAGGATCTCTGTCTATGGAAGAAAACAGAGTGAGTGGGATCAGCTGGCTAGTTGGTTTGTTAACAATGCTCTTTACAGTAAGAATGCTGTCTGGCTAATCCAGTTACCACGGTTATACAATGTGTACAAGAATATGGGAATTGTTACCTCCTTTCAGAATATTCTGGATAATGTGTTTATTCCTCTATTTGAAGTCACAGTGGATCCAAATTCTCATCCTCAATTACATTTGTTTTTGATGCAGGTGGTTGGATTTGATCTTGTAGATGATGAAAGTAAACCAGAAAGACGTCCAACTAAGCACATGCCTACTCCAGCTGAGTGGACAAATGAATTCAATCCTGCATATTCTTATTACCTTTATTACAGCTATGCAAACTTGTACACGCTCAACAAGTTGCGTGAATCTAAGGGAATGACCACAATAAAGTTGCGGCCTCACTGTGGAGAGGCAGGTGACAGTGATCATTTGGCTGCCGCCTTCCTTCTGTGCCATAACATTTCTCATGGGATTAATCTACGTAAAACTCCAGTTTTGCAGTACTTGTATTATCTTGCACAGATTGGATTGGCTATGTCACCACTTAGCAATAATTCCCTTTTCTTGGACTATCATCGCAATCCATTGCCAATGTTTTTCCAGCGAGGTTTAAATGTCTCTCTCTCCTCCGATGATCCTTTGCAAATTCATTTGACAAAAGAGGCACTGCTAGAAGAATATAGTGTTGCAGCAAAGGTATGGAAGCTCTCAGCCTGTGATCTGTGTGAGATAGCTAGAAATTCTGTCTACCAGTCTGGATTTTCACACCAGGCAAAGTCACACTGGCTTGGGGAAAAATATTTGTTGAGAGGTCCTGAAGGAAATGATATTCATAAAACAAATGTCCCCAGTTTGAGGATTTCTTTCCGATACGAGACATGGAAAGAGGAAATGCAATATATTTATGCTGGTAAAGCCATCTTTCCTGAAGATGTATACCCATAG 2607 0.4281 MEPSSSTSLPPLLHIVMAGLLGASFMAISAFYMHRRTVDHVLHRLVEIRRKPLAASNDDSEDDDDDLIGLGHDDRGTDKDADPRNYLRTFSKSVDETSNVLRSYRFSSSMPNVVSAADWFPEDTKNRASSLENLQFAPLGLPSNRTGSTNGESAQISRSYKRIASVGRIMTPRSPGRNAFESAGDSDEEETQLANDNTIPFSDTYGVNSNMCNLSAVPFRGDDANCAKNQMYGEVSKEAKTGANLNVGSSTSVHVAGDDRVFANNVSPARIPVHETNIEEDEVCKMIQECLDLREKYVYKEDIALRTEPVETNFDPYHFEPVEATTHHFRMEDGVIHVFASKTDTKELFPVASSTRFFTDMHYILKVMSIGNVRSACYHRLRFLEEKFRLHLLLNADREFLAQKGAPHRDFYNIRKVDTHIHHSACMNQKHLVRFIKSKLRKEPDEVVIFRDGKYMTLKEVFESLDLTGYDLNVDLLDVHADKTTFHRFDKFNLKYNPCGQSRLREIFLKQDNLIQGRFLAEVTKEVLIDLEASKYQMAEYRISVYGRKQSEWDQLASWFVNNALYSKNAVWLIQLPRLYNVYKNMGIVTSFQNILDNVFIPLFEVTVDPNSHPQLHLFLMQVVGFDLVDDESKPERRPTKHMPTPAEWTNEFNPAYSYYLYYSYANLYTLNKLRESKGMTTIKLRPHCGEAGDSDHLAAAFLLCHNISHGINLRKTPVLQYLYYLAQIGLAMSPLSNNSLFLDYHRNPLPMFFQRGLNVSLSSDDPLQIHLTKEALLEEYSVAAKVWKLSACDLCEIARNSVYQSGFSHQAKSHWLGEKYLLRGPEGNDIHKTNVPSLRISFRYETWKEEMQYIYAGKAIFPEDVYP 868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02484 868 Pfam AMP deaminase 311 855 IPR006329 GO:0003876|GO:0032264
Vimu11g02484 868 CDD AMPD 357 852 IPR006329 GO:0003876|GO:0032264
Vimu11g02484 868 FunFam AMP deaminase 427 517 - -
Vimu11g02484 868 MobiDBLite consensus disorder prediction 170 190 - -
Vimu11g02484 868 MobiDBLite consensus disorder prediction 69 84 - -
Vimu11g02484 868 NCBIfam AMP deaminase 320 855 IPR006329 GO:0003876|GO:0032264
Vimu11g02484 868 PANTHER AMP DEAMINASE 180 858 IPR006329 GO:0003876|GO:0032264
Vimu11g02484 868 ProSitePatterns Adenosine and AMP deaminase signature. 761 767 IPR006650 GO:0009168|GO:0019239
Vimu11g02484 868 MobiDBLite consensus disorder prediction 139 158 - -
Vimu11g02484 868 FunFam Probable amp deaminase 506 851 - -
Vimu11g02484 868 SUPERFAMILY Metallo-dependent hydrolases 272 856 IPR032466 -
Vimu11g02484 868 MobiDBLite consensus disorder prediction 54 84 - -
Vimu11g02484 868 Gene3D - 327 851 - -
Vimu11g02484 868 Gene3D - 427 517 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02484 Vimu-Chr11 43693557 43713916 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02484 K01490 - gmx:100793831 1496.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g02484 11 43693557 43713916 Vimu11g02484 11 43693557 43713916 ECH