Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02375 ATGAAGTTTGGTAAGGAATTTGCTGCACAAATGGTACCAGAATGGCAGGAAGCATACATGAATTATGGCTACCTGAAATCCCTCTTGAAAGATATCATACTTCACAAGCAGCGAAACAAGACTCATTCCAGTACCAGCCCATCAGGTCTAAACCGAAAGTTATCACTCTATAGAGCTTTCAGTGGACTCACACAGAGGCACTACCAACCCTTGAGCCCCGAGCAGGACATTGAGAACCAACCCATTTTGGTGCACTCAGTGCTGCGAGATGGTCATGAAAACTACGAAACCACCTTTCTCATGGCTTCAGAAGAAGGTGGAGAGTACGAGTTGGTGTACTTTAGGAGGCTTGATGATGAGTTCAACAAAGTGGTGAGGTTCTATAGGTCTAAAGTTGAAGAAGTAATGAAGGAAGCAGCTGAGCTGAATAAGCAAATGGATGCTTTGGTAGCATTCAGGGTAAAAGTTGAGAATCCAACTGAGTCATTTGATTGCTCAGTTGAGATGACTCGTCTTGCTTCTGATGTGTCTGCTTCAACCACAGTTTTGCATGCTAATACACCCAGGGGGGTCCATCTGAACAGTAAGTTTCCATCTTTATCTGCTCTTGCTGCATTTGAGTCTTGTACATTGCTGAATTTCAACCTTAGTGAGTGGTTACTTACTGAGTTTACAAAACATGAAGGAGCTTCAATTATCCTTGGTGATAACAAGTCCTGTAAAATAACTGCTCTTGAAACAATTAAGTTTCGTCTGCATGATGGAACTGAGCGGCTGCTTGAAGAAATTAGGTATTTGCCTAGCTTGAAACAAAATTTGATATCTCTTGGTGAACTTGAAAAGAAGGAATATGTGTTCAAAGGTGAAAGGGGAGTGTCGAAGGTGTTAACGGTGTCCATGTTAGGAATGAAGGGTGTGAGAAACAATGATCTGTATGCATTGGAAGGAAGGATTTCCACGGTAATTGAAGATATCAAAGAGGAAGGAAGTTCCCATGATGGACATTTAGAGAAGTTTGAGAATGATGACAAAGGTAGAGTGATTGAAACTACCAACAAAAAGGTTGAAGTACAAAACAAGAAGAAGAATATCAGACCCATCAAACCCATCAAACCTGCTTCTGTGGAAATACTTAATCGAGTGCAGCTAAATAACACATATGAGACTCCTCGTTCAACTATAAGAGGCATCATCAAATACCCTGGTCAAGCAGAGTTAAATTTCACCAAGGAAAATTTGAGCAAAGTAGAAGACGCACTGAGACGGGCTTTTATTGAGTTTTATAACAAGCTTCGACTTCTAAAGAACTACACATTTCTGAATATGTTGGCCTTTTCAAAGATAATGAAGAAATATGACAAGATCACATCAAGAGGTGCAGCAAAAGCTTACATGAAAATGGTTGATAGCTCCTGCCTTGGGAGCTCTGATGAGTTCACCAGGCTTATGGAGAGGGTGGAAAATGTATTCATTAAGCACTTTTCCAACTCAAATCGAAATAAAGGAATGCGCATCCTGCGACCTAAACCAAAGAGAGAAAGGCACAGGATTACATTTTCCATGGCATTGGCACTAACCAGCGTGCTTGTAAATCTAGACATGCAAATAGATCCTGTGACAAATGATTTCAAACCATTCACTGAACTTTTGCCCCTAATCTTGGTTCTGATTGTGATTGCCATTTTATTATGTCCATTAAACATCGTATATCGATCAAGCCGAGTGTTCTTCCTTACATGTGTGTTTCACTGCATCTGTGCTCCTCTATACAAGGTCACACTGCCAGATTTCTTCATGGCCGATCAATTTACAAGCCAGGTTCAAGCCCTGAGAAGTTTTGAGTTCTACATATGCTACTACGGTTGGGGTGACTTCAAACATAGAGAAACAGATTGCAAGTCAAGAAGGGTATTCATAGCTTTCTCATTCATTGTCGCTGTGATTCCATACTGGTCTCGCTTTCTTCAGTGCCTAAGGCGCCTGTTCGAGGAGAAAGATATGATGCAAGGATATAACGGGTTGAAGTATTTCCTCACTATTGCAGCCGTTTGCCTCAGAACAGCGGATACTCTTGATGGAGGAACGCGTTGGAAAGTGATGGCCTGGATATTCTCAATATCCACAGCCATTTTCTCCACATATTGGGACATAGTCATAGATTGGGGCCTCCTCCAAAGACATTCCAGGAACAGATGGCTCAGAGACAAACTCCTGGTCCCTCAGAAAAGTGTATATTTCGCAGCTATGGTGCTGAATGTCTTGTTAAGGTTTGCATGGTTACAAACAATATTGAATTTCAACTTCTCCTTCTTGCATAGACAAGCCATGATCAGCATTGTTGCCAGCTTAGAGATCATTCGTCGTGGCATGTGGAACTTCTTTAGGGTGGAGAATGAACATTTGAACAATGTTGGCAAGTACCGTGCATTCAAGTCTGTGCCTCTACCCTTTAACTACGACGACGATGATGAAGATGGAGATAAGGATGAGTAA 2493 0.4156 MKFGKEFAAQMVPEWQEAYMNYGYLKSLLKDIILHKQRNKTHSSTSPSGLNRKLSLYRAFSGLTQRHYQPLSPEQDIENQPILVHSVLRDGHENYETTFLMASEEGGEYELVYFRRLDDEFNKVVRFYRSKVEEVMKEAAELNKQMDALVAFRVKVENPTESFDCSVEMTRLASDVSASTTVLHANTPRGVHLNSKFPSLSALAAFESCTLLNFNLSEWLLTEFTKHEGASIILGDNKSCKITALETIKFRLHDGTERLLEEIRYLPSLKQNLISLGELEKKEYVFKGERGVSKVLTVSMLGMKGVRNNDLYALEGRISTVIEDIKEEGSSHDGHLEKFENDDKGRVIETTNKKVEVQNKKKNIRPIKPIKPASVEILNRVQLNNTYETPRSTIRGIIKYPGQAELNFTKENLSKVEDALRRAFIEFYNKLRLLKNYTFLNMLAFSKIMKKYDKITSRGAAKAYMKMVDSSCLGSSDEFTRLMERVENVFIKHFSNSNRNKGMRILRPKPKRERHRITFSMALALTSVLVNLDMQIDPVTNDFKPFTELLPLILVLIVIAILLCPLNIVYRSSRVFFLTCVFHCICAPLYKVTLPDFFMADQFTSQVQALRSFEFYICYYGWGDFKHRETDCKSRRVFIAFSFIVAVIPYWSRFLQCLRRLFEEKDMMQGYNGLKYFLTIAAVCLRTADTLDGGTRWKVMAWIFSISTAIFSTYWDIVIDWGLLQRHSRNRWLRDKLLVPQKSVYFAAMVLNVLLRFAWLQTILNFNFSFLHRQAMISIVASLEIIRRGMWNFFRVENEHLNNVGKYRAFKSVPLPFNYDDDDEDGDKDE 830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02375 830 Coils Coil 125 145 - -
Vimu11g02375 830 ProSiteProfiles SPX domain profile. 1 466 IPR004331 -
Vimu11g02375 830 PANTHER XENOTROPIC AND POLYTROPIC RETROVIRUS RECEPTOR 1-RELATED 521 822 - -
Vimu11g02375 830 ProSiteProfiles EXS domain profile. 633 827 IPR004342 GO:0016020
Vimu11g02375 830 CDD SPX_PHO1_like 2 159 IPR034092 -
Vimu11g02375 830 Pfam EXS family 518 801 IPR004342 GO:0016020
Vimu11g02375 830 Pfam SPX domain 1 160 IPR004331 -
Vimu11g02375 830 Pfam SPX domain 335 468 IPR004331 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02375 Vimu-Chr11 41387534 41396908 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02375 - - psom:113300372 601.668
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g02375 11 41387534 41396908 Vimu11g02375 11 41387534 41396908 ECH