Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02226 ATGCTGAATGTTGGGAAAGCGAAATCTTGGAAGGATGCTAAAAATGGGACCCACCGAATGTTACAGTTCAACATTTTATCCACTGAAACAACGCGCGCACGCATATCATTCCTACGAAATCTATCTTTCATGGCTCAAACTCAATCATCTTCACGTAATTCCCTTCTGCTTCTCTTATCATGCACCCTTTTCCGACAACTTTACGCTTCTAACACTAAAATTGGTGTCAACTATGGCACAAAGGCAGACAATCTCCCACCGCCCTCAACGGTCGCCACCTTCCTCAAATCTCAAACCACCATCGACCGCGTCAAAATCTTCGATGCCAACCCCGACATCCTCCGCGCCTTCGCCGGCACTGGAATCTCCGTAACCGTCACGGTGCCGAATGCCGCCATCCCCTCTCTCTCAACTCTTCCTGCCGCGCAAGCTTGGCTCTCCCAAAACATCTCCCCCTTCCTACCGGAAACCGCCGTAACGCGTATCTCCGTCGGAAACGAGGTTGTGGAAAGCTCCGACGAAACACTAATCGCCAACATTCTTCCAGCTATGAAATCCCTCCACGATGCTCTCTCCCACGCCAACCACACTACCGTCCAAGTCTCCACTCCTCACTCGCTCGGGATCCTGGCCTCGTCAGAGCCTCCCAGCGCCGCCTCGTTCCTTCGTGGCTACGACAAATCCATCTTTGGGCCGATGCTGGAATTCCTCCGGCGTACCAAGTCCCCCTTCATGGTGAATCCGTATCCGTTCTTCGGCATCGCCCCAACCGAACCCGAGACCCTGAACTACGCGCTCTTTAAAGAAAACAGCGGTGTTTGGGATGCAGGCACGTCGGTGAACTATACGAACATGTTCGATGCGCAAATGGACGCGGTTTTCTCGGCAATGAAGAAACTGGGGTATGATGACGTGGAACTGGTGGTGGCCGAAACGGGTTGGCCCTCTGTTGGTGAGCCGAAGGAAGCGGGTGTGAGTTTTGAGAATGCGGCGTCGTATAATGGGAATCTGATAAAGCACGTTAACTCTGGGAAAGGGACCCCTCTTATGCCTGATCGGACTTTCGAGACTTTCATCTTCTCTCTGTTCAATGAGAATCTCAAGCCCACAGTTTCTGAGCGTAATTATGGCTTGTTTAATCCTGATCTCACCCCCGTTTACGACGTCGGCGTTTCCATTGCCAAAGAGGCATCTGTTCCGACGTCCGGTCCCGGACCCACATCTGGACCCAGTCCCATATCTGGACGTAAATCTGGACCCAGTCCCACGTCTGCACCCGCTTCTGGACCCAGTCCCACATCTGGACCTGCATCTGGTCCCACGGCATTAACACCATCAGAGGCACCTTCTTCTTCTTCTTCATCATCGTCTTCGAAGAAGAAATGGTGCGTGCCAAAAGGGGATGCGAGTGAAGCAGCTTTGCAGGCTAACATTGACTTTGTTTGTAAAAGCAGCGGAATAGAGTGTGGGGCCATTAACGACGGTGGGAAATGCTTCAAGCCCAACACAGTTAAGTCCCACGCGGCGTACGCCATGAACGCATATTACCAAGCATCTGGTGGTAACGATTTGGACTGTGATTTCAACAACACCGGACTCATCACTTACACCGACCGTAGTTCCCAGGAATGTATGTCTCCAGATGCGGCTACTGGGATGAAGACCAGAAAACCAGACGAAGCTGCCTCAATAACACGGGGCTTCCACAACAATCTCTTCTTTATTTGTATTTCAATTCTAATTTCTTTCACATTTTTCTAA 1761 0.5116 MLNVGKAKSWKDAKNGTHRMLQFNILSTETTRARISFLRNLSFMAQTQSSSRNSLLLLLSCTLFRQLYASNTKIGVNYGTKADNLPPPSTVATFLKSQTTIDRVKIFDANPDILRAFAGTGISVTVTVPNAAIPSLSTLPAAQAWLSQNISPFLPETAVTRISVGNEVVESSDETLIANILPAMKSLHDALSHANHTTVQVSTPHSLGILASSEPPSAASFLRGYDKSIFGPMLEFLRRTKSPFMVNPYPFFGIAPTEPETLNYALFKENSGVWDAGTSVNYTNMFDAQMDAVFSAMKKLGYDDVELVVAETGWPSVGEPKEAGVSFENAASYNGNLIKHVNSGKGTPLMPDRTFETFIFSLFNENLKPTVSERNYGLFNPDLTPVYDVGVSIAKEASVPTSGPGPTSGPSPISGRKSGPSPTSAPASGPSPTSGPASGPTALTPSEAPSSSSSSSSSKKKWCVPKGDASEAALQANIDFVCKSSGIECGAINDGGKCFKPNTVKSHAAYAMNAYYQASGGNDLDCDFNNTGLITYTDRSSQECMSPDAATGMKTRKPDEAASITRGFHNNLFFICISILISFTFF 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02226 586 Gene3D - 455 558 - -
Vimu11g02226 586 SUPERFAMILY (Trans)glycosidases 74 390 IPR017853 -
Vimu11g02226 586 ProSitePatterns Glycosyl hydrolases family 17 signature. 305 318 IPR000490 GO:0004553|GO:0005975
Vimu11g02226 586 Pfam X8 domain 461 532 IPR012946 -
Vimu11g02226 586 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 60 534 IPR044965 GO:0004553|GO:0005975
Vimu11g02226 586 Gene3D Glycosidases 72 398 - -
Vimu11g02226 586 FunFam glucan endo-1,3-beta-glucosidase 7 457 547 - -
Vimu11g02226 586 Pfam Glycosyl hydrolases family 17 74 389 IPR000490 GO:0004553|GO:0005975
Vimu11g02226 586 SMART X8_cls 461 546 IPR012946 -
Vimu11g02226 586 MobiDBLite consensus disorder prediction 397 462 - -
Vimu11g02226 586 FunFam Glucan endo-1,3-beta-glucosidase 3 73 394 - -
Vimu11g02226 586 MobiDBLite consensus disorder prediction 401 461 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02226 Vimu-Chr11 38810278 38812275 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02226 68 391 Miscellaneous Gene Families AT3G46570 63.303 4.90e-143 416
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02226 - - vra:106766036 956.436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g02226 11 38810278 38812275 Vimu11g02226 11 38810278 38812275 ECH