Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02225 ATGGGACACAATCAGAACCAGAGATCTCTGATCTACGCGTTCGTCTCTCGCGGCACCGTGATTCTTGCGGAGTACACCGAATTCAGCGGTAACTTCAACACCATCGCTTTTCAGTGTCTCCAGAAGCTCCCTGCCTCCAACAATAAATTCACCTACAACTGCGACGGCCACACCTTCAATTACCTCGTCGACAACGGATTCACGTATTGTGTTGTTGCGGATGAGTCGATTGGGAGACAGGTGCCTGTGGCTTTTCTGGAGCGCGTGAAGGATGATTTTATTGCCAAGTATGGCGGCGGGAAGGCGGCGACGGCAGCCGCCAACAGCCTGAACAAGGAATTCGGGTCCAAATTGAAGGAGCATATGCAGTACTGTGTTGAGCACCCTGAAGAGATAAGCAAGCTTGCTAAGGTGAAGGCTCAGGTTTCTGAAGTTAAAGGTGTCATGATGGAGAACATTGAAAAGTTTCGAAGTTGGCTGTTGCACACTACTGTCCAGGATAGATATGAACTATTTCTGGTTCTGGACAGAGGGGAAAAGATAGAGCTTCTGGTAGACAAGACTGAAAATCTTCATAACCAGAAAAATGTGGCTGCAAAACATGAAGATAAAGCTGATTGTGTTGGCAATTTTGATAGCCCTGATCCTCATAATAGTCCTGTCTGTTTGCCGTGGGTTCAATTGTTCAAAATAAGCACGGAGTCATTTGACCTTGTTGTGATTATATATGAGGAAAATATGTGGAATGAATGGATGACATGA 762 0.4593 MGHNQNQRSLIYAFVSRGTVILAEYTEFSGNFNTIAFQCLQKLPASNNKFTYNCDGHTFNYLVDNGFTYCVVADESIGRQVPVAFLERVKDDFIAKYGGGKAATAAANSLNKEFGSKLKEHMQYCVEHPEEISKLAKVKAQVSEVKGVMMENIEKFRSWLLHTTVQDRYELFLVLDRGEKIELLVDKTENLHNQKNVAAKHEDKADCVGNFDSPDPHNSPVCLPWVQLFKISTESFDLVVIIYEENMWNEWMT 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02225 253 PANTHER SNARE PROTEINS 7 197 - -
Vimu11g02225 253 SUPERFAMILY SNARE fusion complex 129 194 - -
Vimu11g02225 253 SMART Longin_2 35 117 IPR010908 -
Vimu11g02225 253 Gene3D - 134 204 - -
Vimu11g02225 253 ProSiteProfiles Longin domain profile. 14 118 IPR010908 -
Vimu11g02225 253 FunFam Vesicle-associated membrane protein 722 4 131 - -
Vimu11g02225 253 CDD Longin 11 125 IPR010908 -
Vimu11g02225 253 Pfam Regulated-SNARE-like domain 38 114 IPR010908 -
Vimu11g02225 253 CDD R-SNARE 134 194 - -
Vimu11g02225 253 Gene3D Longin domain 1 133 - -
Vimu11g02225 253 SUPERFAMILY SNARE-like 10 125 IPR011012 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02225 Vimu-Chr11 38797755 38803101 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02225 7 194 Miscellaneous Gene Families AT1G04760 76.064 1.89e-102 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02225 K08511 - gmx:100820382 326.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g02225 11 38797755 38803101 Vimu11g02225 11 38797755 38803101 ECH