Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02079 ATGGCCTTCTGTAGTGGTACCTTGCTTAAGCCAAACTATTGCTTCTCCCCATCCCACAAACCCAAAGCTCCAACTCGATACTATGATACCAGAAAAAAGTTCTGCGTGAGAGTTTCGGCAAATGACTCGGGTGACGTCGAGAAGACTATTATCAGGAAAGAGAAAGACGGCTGGAAGATCAATTACTCAGGAGAGAAACCTCAAACACCACTGTTGGACACAATCAACCACCCAATTCACATGAAGAATCTGTCCACTCAGGATCTAGAGCAACTTGCAGCAGAGCTGAGGGCAGATATTGTGCACAGTGTGTCAAACACTGGTGGGCATCTTAGTTCAAGCTTGGGAGTGGTGGAGTTAGCAGTGGCTTTGCATCATGTTTTCGACACCCCTGAAGACAAAATTATATGGGATGTTGGTCATCAGGCATACCCACACAAGATTCTCACAGGTAGAAGGTCCAGAATGCACACCATTAGGAAGACTTCGGGGCTGGCTGGTTTTCCTAAAAGGGATGAGAGCATTCATGATGCTTTTGGGGTAGGACACAGTTCTACAAGCATATCTGCTGGTCTTGGCATGGCTGTTGCACGTGATTTACTGGGGAAGAAGAACAGCATCATATCAGTGATAGGAGATGGGGCATTGACAGCAGGCCAAGCTTACGAGGCCATGAACAACGCAGGGTTCCTTGATTCTAACATGATAGTAGTACTTAATGACAACAAGCAAGTCTCTTTACCAACTGCCACACTTGATGGACCTGCAACTCCTGTCGGAGCACTTAGCAGTGCTTTGAGCAAAATTCAAGCGAGTACAGAATTCCGTAAACTCAGAGAAGCTGCAAAAGTAAGCCTCTTAATCTTATCATATTCGTATCAGCGTCATGACCTCAGTGATCATGTCAAACTTTATACAAGCTGTGGCCTTTATTTGACTTCAATTTTATTCCTGAAGAGTATCACGAAACAAATTGGAGGACAAACACACCAGGTTGCAGCCAAAGTGGATGAATATGCAAGAGGCATGATCAGCGGTTCTGGATCTACATTATTTGAAGAACTTGGCTTATACTACATAGGTCCTGTGGATGGTCATAACATTGAAGATCTGGTCACCATCTTTGAAAAAGTCAAATCAATGCCTGCTCCAGGTCCAGTTTTGATTCATATTGTCACAGAGAAAGGAAAGGGATATCCCCCGGCAGAAAAAGCAGCTGATAAAATGCACGGAGTTGTGAAGTTTGATCCAAAAACAGGGAAGCAGGTTAAGGCAAAATCCTCAACACTTTCATACACACAGTATTTTGCCGAGTCTTTGATAAAGGAGGCTGAAATAGACAACAAGATAGTGGCCATTCACGCAGCAATGGGTGGTGGTACAGGTCTAAATTATTTCCACAAAAGGTTTCCCGATCGCTGTTTCGATGTGGGGATAGCTGAGCAGCATGCTGTTACATTTGCTGCTGGGTTAGCTGCTGAAGGCCTCAAGCCCTTTTGTGCCATTTACTCATCATTCCTGCAACGAGGTTATGATCAGGTAGTCCATGATGTTGATCTTCAAAAGCTACCTGTTCGATTTGCCATGGATAGAGCTGGTTTGGTTGGAGCAGATGGACCAACCCATTGTGGAGCATTTGATATCACTTACATGGCTTGCTTGCCCAACATGGTGGTCATGGCTCCTTCTGATGAAGCTGAGCTGATGCACATGGTTGCAACAGCAGCAACTATAGATGACAGACCAAGCTGCTTCAGATTTCCAAGGGGAAATGGAATTGGAGCCACTTTACCACTCAACAACAAAGGAACCCCACTTGAGATCGGAAAAGGCAGAATTCTTATGGAAGGCAGCAGAGTTGCTATCTTGGGATATGGTTCTGTGGTTCAACAATGCAGACATGCCTCGGAATTGCTTAAAGAAGTAGGCGTTAGTGTGACAGTTGCTGATGCTAGGTTTTGCAAACCTTTGGATACCGATCTCATCAGGCTACTGGCTAAAGAGCATGAAATACTGATCACGGTGGAAGAGGGTTCTATTGGTGGTTTTGGATCACATGTTTCTCAATTCTTGAGCTTATCTGGTATTCTAGACGGACCTCTAAAGTGGAGAGCAATGATGCTTCCTGACAGATACATTGATCATGGGTCACCCCAGGATCAGGTTGAAGAAGCAGGGCTTTCATCAAAGCACATTGCGGCCACAGTGATGTCACTTCTTGAAAGGCCAAAAGAAGCTCTTCTGTTTAAATAG 2253 0.4478 MAFCSGTLLKPNYCFSPSHKPKAPTRYYDTRKKFCVRVSANDSGDVEKTIIRKEKDGWKINYSGEKPQTPLLDTINHPIHMKNLSTQDLEQLAAELRADIVHSVSNTGGHLSSSLGVVELAVALHHVFDTPEDKIIWDVGHQAYPHKILTGRRSRMHTIRKTSGLAGFPKRDESIHDAFGVGHSSTSISAGLGMAVARDLLGKKNSIISVIGDGALTAGQAYEAMNNAGFLDSNMIVVLNDNKQVSLPTATLDGPATPVGALSSALSKIQASTEFRKLREAAKVSLLILSYSYQRHDLSDHVKLYTSCGLYLTSILFLKSITKQIGGQTHQVAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNIEDLVTIFEKVKSMPAPGPVLIHIVTEKGKGYPPAEKAADKMHGVVKFDPKTGKQVKAKSSTLSYTQYFAESLIKEAEIDNKIVAIHAAMGGGTGLNYFHKRFPDRCFDVGIAEQHAVTFAAGLAAEGLKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITYMACLPNMVVMAPSDEAELMHMVATAATIDDRPSCFRFPRGNGIGATLPLNNKGTPLEIGKGRILMEGSRVAILGYGSVVQQCRHASELLKEVGVSVTVADARFCKPLDTDLIRLLAKEHEILITVEEGSIGGFGSHVSQFLSLSGILDGPLKWRAMMLPDRYIDHGSPQDQVEEAGLSSKHIAATVMSLLERPKEALLFK 750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02079 750 ProSitePatterns Transketolase signature 2. 536 552 IPR020826 -
Vimu11g02079 750 NCBIfam 1-deoxy-D-xylulose-5-phosphate synthase 318 740 IPR005477 GO:0008661|GO:0016114
Vimu11g02079 750 Gene3D - 430 597 - -
Vimu11g02079 750 Pfam 1-deoxy-D-xylulose-5-phosphate synthase 72 287 IPR005477 GO:0008661|GO:0016114
Vimu11g02079 750 Pfam 1-deoxy-D-xylulose-5-phosphate synthase 316 393 IPR005477 GO:0008661|GO:0016114
Vimu11g02079 750 Gene3D - 609 742 IPR009014 GO:0003824
Vimu11g02079 750 Hamap 1-deoxy-D-xylulose-5-phosphate synthase [dxs]. 71 741 IPR005477 GO:0008661|GO:0016114
Vimu11g02079 750 ProSitePatterns Transketolase signature 1. 97 116 IPR005474 -
Vimu11g02079 750 FunFam 1-deoxy-D-xylulose-5-phosphate synthase 609 741 - -
Vimu11g02079 750 Pfam Transketolase, C-terminal domain 609 732 IPR033248 -
Vimu11g02079 750 SMART Transket_pyr_3 430 595 IPR005475 -
Vimu11g02079 750 CDD TPP_DXS 108 399 IPR005477 GO:0008661|GO:0016114
Vimu11g02079 750 PANTHER 1-D-DEOXYXYLULOSE 5-PHOSPHATE SYNTHASE-RELATED 29 747 IPR005477 GO:0008661|GO:0016114
Vimu11g02079 750 CDD TPP_PYR_DXS_TK_like 436 589 - -
Vimu11g02079 750 Gene3D - 64 402 - -
Vimu11g02079 750 FunFam 1-deoxy-D-xylulose-5-phosphate synthase 429 597 - -
Vimu11g02079 750 Pfam Transketolase, pyrimidine binding domain 430 591 IPR005475 -
Vimu11g02079 750 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 427 618 IPR029061 -
Vimu11g02079 750 SUPERFAMILY TK C-terminal domain-like 604 740 IPR009014 GO:0003824
Vimu11g02079 750 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 69 492 IPR029061 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02079 Vimu-Chr11 34424313 34427862 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02079 410 688 Acyl Lipid Metabolism Gene Families AT1G55510 21.379 2.38e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02079 K01662 - gmx:100798930 1301.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g02079 11 34424313 34427862 Vimu11g02079 11 34424313 34427862 ECH