Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01847 ATGACCGGAAGTGGGAGAACCGCCGTTCGGAGTAGAGCGAAATCCCTCTCTGACGCCGATTCTCGTCGAGAAAGGAGACCTCTGCTGAATCGCCACAGAGAGAGAAGCAAATACGGAAGCTCCATTCCGATATTCAATACTGCCAATCTCAAAGTGGTGCTCGGCATATGCTTCCTGGCATTCTTCACCATCTTCTTTATGATCCGCCACCTAATGAATTCCGCCACGGAACTGAAGCTTCCTCGGGCCGTTACGCCATTTCCCGCGCCAAAGATAATGGACCTACATCAGTTTCAAGGCGAGCACAAGGAGAGTTTGTATTGGGGAACTTATCGGCCTCACACGTATCTTGGGATTCGTGCCAGGACTCCCAAATCTTTGATAGCTGGATTAATGTGGATTGGTGTGAAGGATGGCAGATATCATTTGCGGCATGTCTGCAGACATGAGGATGACCTGAGTACTTATGGTTGGACAAAGCACAATGGACGTGATTTTGGACATCAAGTACTGGTTGACCATGGCATGACCTTGACTACAAGGTTTTTAAAATCAAAAGTAGAAGGCAGTGGTTATGGAGGGGATTGGGCAGTTCGAATTAATGTGGAAATTGACAAGTCTAAGTGGAATGAGGAATTTGGTAAAGGTGCTCAGCTCTTCTTCTATTTGGCCGATGAAGCTGGTAATGCTCTAGATGTAAGCAGAGAAAAGTTGAACATTCATGAGGATACTTTGCTAGCAACTGGCACTCGGGGAGATATTGGAGATTGGCAACTACATTTTAAATCAATGGATGATTTGGAACTGCATTATTCAGGATTTCGCACACCTCACTTTCACAATTTGTCTGATCTTGTTGAGGAAAATCTTGCATCACAAATACATAAACATGCTCGACTGCAGCTATCTGACTCATTAGATGATGCTCCAAATGTGTTAGTTTTTCAGATTATTGGTGGATTTCCTTTCACAACAGATATTGTACTAATCACTGGAACTGATATAGAAAGTTCTCAAGAAGAGCGTGTCAGTATGCTTACAGGAGTTGGTCATTGCCTTGGAAACCTGCATCTCATGTTGATGGACATTGTTGGGGTTGTTTATAGAGCAGTAGATTCTGAATCCATATCTGTTGCTAAGGCCGCCATTGGAAACTTATTAGGTGGCATTGGCTACTTCTATGGCCAGTCAAAAATTGCTCTTTCAAGAATCCTTAACCTTAGAGAAGATGTCAATTATATATCATATTGGCCTACTGAGCTTTACACAGCTGTACCAAGTCGATCTTTCTTTCCAAGAGGATTTTTGTGGGATGAAGGTTTCCATCAACTTATAATCTGGCGTTGGGATATTCATATCTCGTTGGATATCATTGGACATTGGTTAGATTTGATGAATGTAGATGGATGGATTCCACGTGAGCAAATTCTGGGGGCTGAATCACTGAGTCGGGTCCCTGAGGAATTTGTTCCTCAACATCCAACAAATGGAAACCCTCCAACTCTGTTTTTAGCATTAAATGATATAATTAGTGGCTTGAAAAATAACGAATTTACTGCAATGGATGGAAGTAAAATCTCTCTATTCCTGGAACGTGCCTTTGTTCGATTGGAAGCATGGTTCCATTGGTTTAATACAACTCAATCAGGGAAACAAATGAGCAGCTACTATTGGCATGGACGAGACAATAGGACAATGCGTGAAATAAATCCCAAGGCAATGTGCATCCTCAGTATATTGAGTTTTAAATTTCAGCACTTGTCTTCAATTTCATTTTGA 1779 0.421 MTGSGRTAVRSRAKSLSDADSRRERRPLLNRHRERSKYGSSIPIFNTANLKVVLGICFLAFFTIFFMIRHLMNSATELKLPRAVTPFPAPKIMDLHQFQGEHKESLYWGTYRPHTYLGIRARTPKSLIAGLMWIGVKDGRYHLRHVCRHEDDLSTYGWTKHNGRDFGHQVLVDHGMTLTTRFLKSKVEGSGYGGDWAVRINVEIDKSKWNEEFGKGAQLFFYLADEAGNALDVSREKLNIHEDTLLATGTRGDIGDWQLHFKSMDDLELHYSGFRTPHFHNLSDLVEENLASQIHKHARLQLSDSLDDAPNVLVFQIIGGFPFTTDIVLITGTDIESSQEERVSMLTGVGHCLGNLHLMLMDIVGVVYRAVDSESISVAKAAIGNLLGGIGYFYGQSKIALSRILNLREDVNYISYWPTELYTAVPSRSFFPRGFLWDEGFHQLIIWRWDIHISLDIIGHWLDLMNVDGWIPREQILGAESLSRVPEEFVPQHPTNGNPPTLFLALNDIISGLKNNEFTAMDGSKISLFLERAFVRLEAWFHWFNTTQSGKQMSSYYWHGRDNRTMREINPKAMCILSILSFKFQHLSSISF 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01847 592 MobiDBLite consensus disorder prediction 13 34 - -
Vimu11g01847 592 Pfam Glycosyl hydrolase family 63 C-terminal domain 372 574 IPR031335 -
Vimu11g01847 592 Gene3D - 93 348 IPR038518 -
Vimu11g01847 592 Pfam Glycosyl hydrolase family 63 N-terminal domain 105 265 IPR031631 -
Vimu11g01847 592 MobiDBLite consensus disorder prediction 1 34 - -
Vimu11g01847 592 Gene3D - 368 578 IPR012341 GO:0005975
Vimu11g01847 592 FunFam Mannosyl-oligosaccharide glucosidase GCS1 93 356 - -
Vimu11g01847 592 SUPERFAMILY Six-hairpin glycosidases 380 560 IPR008928 GO:0005975
Vimu11g01847 592 PANTHER MANNOSYL-OLIGOSACCHARIDE GLUCOSIDASE 54 573 IPR004888 GO:0004573|GO:0009311
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01847 Vimu-Chr11 25888819 25895330 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g01847 77 575 Glycoside Hydrolase AT1G24320 51.287 0.0 541
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01847 K01228 - gmx:100795691 992.645
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g01847 11 25888819 25895330 Vimu11g01847 11 25888819 25895330 ECH