Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01844 ATGCTAGACGGGTTCAGATTGAAACAGCCACTAGACAACCAAACACTCCCCCAAAAGTTGAATCGTCACACAGGAAAAAGTTCAATTCCAATGTTCAACGTTAGAATTATTCTCGGTATCGTCGTGTTTCTGATTTTGAACCATGCCGAATCAGCCGCAGAACACGGTCTGCCTCGCGTTGTCACTCCACTTCCTGCGCCTAAGATAACCGACCTTCCTCAGTTTCAAGGACAGCACAAGGAGAATTTGTATTGGGGAACGTATCGTCCTCAGGTCTATCTGGGAGTTCGTGCCAGGACTCCAAAATCTTTGATTGCTGGATTGATGTGGATTGTGGTGAAAGATAGCAAATATCACTTGCGGCATGTTTGCAAACATGAGGATGACCTAAGTACTTATGGTTGGACCAAGCACAATGGACGTGATTTTGGACATCAAATGCTGGTTGACCATGGCATGACCTTGACTACTGAGTTTTTAAAATCTAAAGAGGAAGGAAGTGCCTATGGAGGAGATTGGGCAGTTCGAATTAATGTGCAAGCTCATAAGTCCAAGTGGAATGAGGAATTTGGAAAAGGTGCCCACCTTTTTTTCTATATGGCAGACGAAGGTGCTAATGCTCTAAATTTAAGTAGAAAAAACTTAAACATTCTTGAGGATTCTTTACTGGCATCTGGGTCTCATGCGGACACTGGAGACTGGCAGCTTCATCTGAAATCAATGGATGATTTGGAGCTGCATTATTCTGGATTTCGCACTCCTCATTTTCACAATTTGTCTGATCTTGTCGAGGAAAATCTTTCATCACAAATAAGAAAGAATGCTCGACTGCTGCTATCTGACTCATCAGATGATTCTCCAAATTTGTTAGTTTTTCAGATTATTGGTGGATTTTCTTTCACAACAGATGTTATATTTGTCTCTGGAACTCATTCAGAAAGTTCAAGAGTGGAAGAGCGTGTCAGTAGTCTTTCAGGAACCTCATTGTCCAATCAACTGAAATATAAAGAACAAGCATTTGATGAAAAGTTTGACAAAGTTTTCAATTTAGAAGAGAAGGTGGATTCAGAATCCAAATCTGTTGGTAAGGCAGCTGTTGGAAACTTATTAGGTGGCATCGGCTACTTCTATGGCCAGTCAAAAATTGCTGTTTCGGGAATCACCAATAACTCGGGAAGATATGCAGTGGATTGTTTCCCTTTGCAGCTTGGAGATCATGTTAATTATATATCATATTGGCCTGCTGAGCTTTACACAGCAGTACCATGTCGACCTTCCTTTCCAAGAGGATTTTTATGGGATGAAGGTTTTCATCAACTTATAATCTGGCGTTGGGATATCCATATTTCACTGGATATCATCGGACACTGGTTGGATTTGATGAATGTTGATGGATGGATACCTCGTGAACAAATTCTCGGAGACGAAGCACTGAGCCGGGTCCCTGAGGAATATGTTCCTCAGCATCCTACTAATGCAAATCCTCCAACTCTGTTCTTAGCATTAAGAGATATAATAAATGGCTTGAAGAATAATGAGTTTACTGCAATGGATAAAACTGACATCCTTGCATTCCTGGAGCGAGCTTTTGTTCGATTAGAAGCATGGTTCCATTGGTTCCATACAACTCAATCAGGGAAACAGATGAGCAGCTACTATTGGCATGGACGGAACAATAAGACTATATATGAATTGAATCCCAAGATTAACTTGACCAAAACAACCACTGTCATGCCCCAAATAGAAGCAATGCTTAATACAGCGTCTACACTGTCCTCTGGATTTGATGATTATCCGCGTGCTTCACACCCGACTGCAGACGAACGCCATGTGGATCTTAGATGTTGGATATTACTTGCAGCAGAATCTTTGCATTCCATTGAAGAGTTATTGGATAAGGAAACTACACCTGCCATGAATTATGGTTACACTGCTCAATTGCTATCAGATATCGAGTTACTGAACCAGATGCATTTTGATGATGCATATGGAGCTTATTTTGACTTTGGGAATCATACAGAAAAGGTTCAACTTAAATGGAAAGATGTGGATATAGGACACAACCATACTGATCGCCAGCTTGTCAGGGATGTTTCAGAGAGACCTGTATTGAGATTGGTTCCTCATATTGGTTATGTAAGCCTATTCCCATTCATGGGGAAGATCATTCCATCTGGATCATGGATTCTGGAAAAGCAGCTTGAACTCATTTCAAATCATAGCCTCTTTTGGACTGACTATGGACTACGATCGCTTGCCACCACAAGCTCCTTGTATATGAAATTCAACTCAGAGTCTGAGGGCCCATACTGGAGAGGTCAAATTTGGATAAACATAAATTACAGAGTTCTTTCAGCGCTCCACCATTACTCCAAAGAGAATGGACCATATCAGGACAGAGCCAAAGCTATCTACAAAGACCTGAGAAGCAATTTAATTAGAAATATAGTACGCAATTATCAAGAGACTGGATTTTTATGGGAACAGTATGATCAGAATAGCGGTGAGGGAAAAGGGTCGCATCCATTTACTGGCTGGACATCTCTTGTTGTATTAATCATGGCGGAAGAATATGACAGAGTTTAG 2586 0.4107 MLDGFRLKQPLDNQTLPQKLNRHTGKSSIPMFNVRIILGIVVFLILNHAESAAEHGLPRVVTPLPAPKITDLPQFQGQHKENLYWGTYRPQVYLGVRARTPKSLIAGLMWIVVKDSKYHLRHVCKHEDDLSTYGWTKHNGRDFGHQMLVDHGMTLTTEFLKSKEEGSAYGGDWAVRINVQAHKSKWNEEFGKGAHLFFYMADEGANALNLSRKNLNILEDSLLASGSHADTGDWQLHLKSMDDLELHYSGFRTPHFHNLSDLVEENLSSQIRKNARLLLSDSSDDSPNLLVFQIIGGFSFTTDVIFVSGTHSESSRVEERVSSLSGTSLSNQLKYKEQAFDEKFDKVFNLEEKVDSESKSVGKAAVGNLLGGIGYFYGQSKIAVSGITNNSGRYAVDCFPLQLGDHVNYISYWPAELYTAVPCRPSFPRGFLWDEGFHQLIIWRWDIHISLDIIGHWLDLMNVDGWIPREQILGDEALSRVPEEYVPQHPTNANPPTLFLALRDIINGLKNNEFTAMDKTDILAFLERAFVRLEAWFHWFHTTQSGKQMSSYYWHGRNNKTIYELNPKINLTKTTTVMPQIEAMLNTASTLSSGFDDYPRASHPTADERHVDLRCWILLAAESLHSIEELLDKETTPAMNYGYTAQLLSDIELLNQMHFDDAYGAYFDFGNHTEKVQLKWKDVDIGHNHTDRQLVRDVSERPVLRLVPHIGYVSLFPFMGKIIPSGSWILEKQLELISNHSLFWTDYGLRSLATTSSLYMKFNSESEGPYWRGQIWININYRVLSALHHYSKENGPYQDRAKAIYKDLRSNLIRNIVRNYQETGFLWEQYDQNSGEGKGSHPFTGWTSLVVLIMAEEYDRV 861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01844 861 SUPERFAMILY Six-hairpin glycosidases 334 858 IPR008928 GO:0005975
Vimu11g01844 861 Pfam Glycosyl hydrolase family 63 N-terminal domain 83 241 IPR031631 -
Vimu11g01844 861 PANTHER MANNOSYL-OLIGOSACCHARIDE GLUCOSIDASE 36 858 IPR004888 GO:0004573|GO:0009311
Vimu11g01844 861 Pfam Glycosyl hydrolase family 63 C-terminal domain 325 568 IPR031335 -
Vimu11g01844 861 Pfam Glycosyl hydrolase family 63 C-terminal domain 584 856 IPR031335 -
Vimu11g01844 861 Gene3D - 352 860 IPR012341 GO:0005975
Vimu11g01844 861 Gene3D - 70 351 IPR038518 -
Vimu11g01844 861 FunFam mannosyl-oligosaccharide glucosidase 352 858 - -
Vimu11g01844 861 FunFam Mannosyl-oligosaccharide glucosidase GCS1 70 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01844 Vimu-Chr11 25852839 25871704 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g01844 54 858 Glycoside Hydrolase AT1G24320 55.446 0.0 927
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01844 K01228 - gmx:100795161 1412.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g01844 11 25852839 25871704 Vimu11g01844 11 25852839 25871704 ECH