Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01700 ATGGGTACGCTTCAGTCTTGGAGGAGAGCCTACGGTGCGATCAAGGACACCACCAAAGTGGGTCTTGCCCATGTCAATAGCGATTACGCGGATTTGGATGTTGCCATAGTCAAAGCTACGAACCACGTCGAGTGTCACCCCAAAGAGAGGCACCTCAGAAAGATTCTGTTTGCCACGTCTGCTGTTCGACCTAGGGCTGATGTTGCTTACTGTATTCACGCCCTTTCCCGGCGGTTGGCAAAGACGCGCAATTGGACGGTGGCATTGAAAACACTGATAGTCATCCATAGGCTATTGAGAGAGGGTGATCCTACTTTTAGAGAAGAACTTCTTAATTTCTCACAAAGAGGACGGATTCTCCAACTTTCGAATTTCAAGGATGATTCTAGCCCAATTGCTTGGGATTGCTCTGCCTGGGTACGTACTTATGCACTATTTTTAGAAGAAAGACTTGAATGTTTTCGGATTCTGAAGTATGATATTGAAGCTGAGCGTCTACCCAAACCTGCCCAAGGGCAGGAGAAGGGGTACAGTAAGACTAGGGATTTGGATAGTGAGGAGCTATTGGAGCACTTACCTGCTTTGCAGCAGCTGCTGCATCGCCTTGTTGGTTGTCGGCCAGAAGGAGCAGCTGTTAACAATTATGTGATACAATATGCTTTGGCTCTGGTACTGAAAGAGAGCTTTAAGATTTATTGTGCTATTAATGATGGCATTATCAATCTTGTTGATAAGTTTTTTGAGATGCCCAGACACGAAGCTATCAAAGCCCTTGAAGCTTACAAACGTGCAGGTCAACAGGCAGCAAGTCTATCTGATTTCTATGATGTTTGCAAAGGGTTGGAACTTGCTAGGAATTTTCAGTTTCCTGCCTTAAGAGAACCTCCACAATCTTTTCTTACAACCATGGAAGAGTACATTAAGGAGGCACCACGAGTGGTTACAGTTCCAAGTGAACCGTTGCTACAATTGACTTACAGACCAGAAGTTCTTGCAATTGAAGATACCAAACCATCTGTTGAAGAACAGGAGCCGCCACCAGTTACTGTTGACAATAATGTTGTCTCTGATTCTGAACATGCACCTCCTCCACCACCACCATCTCATAACAATTTTGAAACTGGAGACCTGCTGGGACTGAATGACACTGCACCTGATGCATCCCTCATAGAGGAAAGAAATGCTCTTGCCCTAGCCATAGTCCCCACTGAAACTGGAACTCCATCAGCTTTTAACTCAAATTCTGCTCAAACAAAAGATTTTGATCCAACTGGATGGGAGCTTGCCCTGGTCAGCACTCCAAGTACTGATATTTCTGCAGCCAATGAGAGACAATTGGCTGGTGGATTGGACTCTCTTACTCTTAATAGCTTATACGATGAAGCAGCATATAGATCTCAACAACCAATATACGGAGCAGCAGCCCCAAATCCATTTGAAGTGCAGGATCCATTTGCTTTATCAAGCAGCGTCCCTCCCCCGCCTGCTGTTCAAATGGCAGCAATGCAACATCAAGCAAATCCTTTTGGACCTTACCAACCATTTCAACCTCAGACACAGCCACAACAGCAGCAGCAGCATATGTTGATGAACCCAGCAAATCCCTTTGGGGATACAGGATTTGGAGCATTCCCCCCCAATGCTGTTTCTCACCCACAGAACAATCCATTTGGAAGCACTGGCTTGTTATAA 1692 0.4545 MGTLQSWRRAYGAIKDTTKVGLAHVNSDYADLDVAIVKATNHVECHPKERHLRKILFATSAVRPRADVAYCIHALSRRLAKTRNWTVALKTLIVIHRLLREGDPTFREELLNFSQRGRILQLSNFKDDSSPIAWDCSAWVRTYALFLEERLECFRILKYDIEAERLPKPAQGQEKGYSKTRDLDSEELLEHLPALQQLLHRLVGCRPEGAAVNNYVIQYALALVLKESFKIYCAINDGIINLVDKFFEMPRHEAIKALEAYKRAGQQAASLSDFYDVCKGLELARNFQFPALREPPQSFLTTMEEYIKEAPRVVTVPSEPLLQLTYRPEVLAIEDTKPSVEEQEPPPVTVDNNVVSDSEHAPPPPPPSHNNFETGDLLGLNDTAPDASLIEERNALALAIVPTETGTPSAFNSNSAQTKDFDPTGWELALVSTPSTDISAANERQLAGGLDSLTLNSLYDEAAYRSQQPIYGAAAPNPFEVQDPFALSSSVPPPPAVQMAAMQHQANPFGPYQPFQPQTQPQQQQQHMLMNPANPFGDTGFGAFPPNAVSHPQNNPFGSTGLL 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01700 563 PANTHER CLATHRIN ASSEMBLY PROTEIN 6 504 IPR045192 GO:0048268|GO:0072583
Vimu11g01700 563 FunFam Clathrin assembly protein AP180 6 161 - -
Vimu11g01700 563 Gene3D - 7 161 IPR008942 -
Vimu11g01700 563 SUPERFAMILY GAT-like domain 179 309 - -
Vimu11g01700 563 SMART enth_2 30 161 IPR013809 -
Vimu11g01700 563 Pfam ANTH domain 31 309 IPR011417 GO:0005543
Vimu11g01700 563 FunFam Putative clathrin assembly protein 173 321 - -
Vimu11g01700 563 CDD ANTH_N 32 154 - -
Vimu11g01700 563 Gene3D ANTH domain 173 323 IPR014712 GO:0005545|GO:0030136|GO:0030276|GO:0048268
Vimu11g01700 563 MobiDBLite consensus disorder prediction 337 380 - -
Vimu11g01700 563 ProSiteProfiles ENTH domain profile. 24 161 IPR013809 -
Vimu11g01700 563 SUPERFAMILY ENTH/VHS domain 31 162 IPR008942 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01700 Vimu-Chr11 22028870 22041965 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01700 - - gmx:100794160 973.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g01700 11 22028870 22041965 Vimu11g01700 11 22028870 22041965 ECH