Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01694 ATGGATCTTCAAGAAAACCCCCAGAATTCTGGGATGAAGAAACGAAAGCCGGAGCAGGGATTCGACCATCAGCCTATCACTTTTGAAAATAGCCTAAAGACTGACCTTGAAAACATGTTTGTTAGTGCTTTTGATTTGGGAAATGACCTTTTTCTCAATGTGAATTTTAAGTATTGTTTTGCTCATTTGCAGGATGATGCTTTGATCAGTAATCATGGAAATTCTATGAGTGTAGGAGAGTCATCTGGGAGTGGTGATCTCTGCAAGAGTTCTACCTCAGGATCACTGAATTCAAACAATCAAAATGGTTCCAATTCTGACATTTCATGTCAAGAAGATGAGGATATGATTGGTGATGATGAAGATATGATTGATGATGATGATGATGCAGATGAAGACGCTGATTATGCTTTTAGTTACAATGACGATATTTATGAAGACAACTATTCAAGTATGCAGGATCATTTTGACAGTGTGGATTTACCTCCTGGGGTGGAGGCATCACTGCCTTGGTTGAAGGACATTTCTTCTAGTGATTGCAAGCAGGCTGTCACCTTTCCCCGTGCAGAATCTAGTTCAAAGGGAAAAGTGGACGAAATTGATGATATGGTCTTGCAGAAGTTTCAACAATTCAAGCAATTTGATACTGTTGATTCTTTTCCTGAACATCACTATGATAAGGAGCGAGCTTCAGAGTCACAGAAACCTAAAAATTGGGCCAAAAAGATTCAGGAGGAATGGAAAATTTTAGAGGAGAATCTGCCCGATACAATCTTTGTGAGAGTTAGTGAATCAAAGATGGAGCTTCTAAGGGTTGTCATCATTGGACCTCAAGGCACACCATATCATGATGGTCTTTTCTTTTTTGATTGCCTCTTTCCTGCTAACTATCCTACAGTTCCACCGAAAGTTCACTACCACTCCGGTGGCCTAAGACTAAATCCAAATCTATATGAAAGTGGAAAAGTGTGCCTTAGCCTTCTGGGAACTTGGCATGGTAAGAATAGTGAAAACTGGATTCCAGAAAAATCAACCATGCTACAAGTATTGGTTTCAATACAAGCTCTAATTCTAAATGAGAAGCCTTTCTTTAATGAACCTGGATACTTATCAACATATCCTGGAGCGGAGGGGCAAAGAAGATCTAAGGAGTACAATGAGCAGACATTTATTCTTTCCTTGAGGACAATGATGTATACCCTGCGTTTTGGGGTGTCATGGAGAAAACATAAAATTGAAACAACTGGGCAGGGGGAAAATGTGGAGGATAACACAGGGGCAGGAAAACCCTTCGAGGAGTTTGTTGCAGGGCATTTCCGAACCCGAGCATATTTCATACTGACAGCATGTAAATCATATGTGGAGGGGGCTCCGGTCGGGTCGGTTGTACATAATCTAGTTCCAAGTATCAGTTCTACAACTCCAGCCAACAGCCAAAAGGAATTCGAGTCAGCTGTGAGTGGGACGATGAATACTCTTATTGCATTTTTCACCAAAAATGGCTCCACAGACTGTGATGAGTTTCGATCTCCTGAGATTTATAACCTGTCTCCTGTGGCTACTGCAAACTTAGAGGTTTACAAGATAGAGTCTTCTGGCACAACAACATTGACCCAGGTGTGA 1623 0.411 MDLQENPQNSGMKKRKPEQGFDHQPITFENSLKTDLENMFVSAFDLGNDLFLNVNFKYCFAHLQDDALISNHGNSMSVGESSGSGDLCKSSTSGSLNSNNQNGSNSDISCQEDEDMIGDDEDMIDDDDDADEDADYAFSYNDDIYEDNYSSMQDHFDSVDLPPGVEASLPWLKDISSSDCKQAVTFPRAESSSKGKVDEIDDMVLQKFQQFKQFDTVDSFPEHHYDKERASESQKPKNWAKKIQEEWKILEENLPDTIFVRVSESKMELLRVVIIGPQGTPYHDGLFFFDCLFPANYPTVPPKVHYHSGGLRLNPNLYESGKVCLSLLGTWHGKNSENWIPEKSTMLQVLVSIQALILNEKPFFNEPGYLSTYPGAEGQRRSKEYNEQTFILSLRTMMYTLRFGVSWRKHKIETTGQGENVEDNTGAGKPFEEFVAGHFRTRAYFILTACKSYVEGAPVGSVVHNLVPSISSTTPANSQKEFESAVSGTMNTLIAFFTKNGSTDCDEFRSPEIYNLSPVATANLEVYKIESSGTTTLTQV 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01694 540 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 238 398 IPR000608 -
Vimu11g01694 540 SMART ubc_7 241 398 - -
Vimu11g01694 540 MobiDBLite consensus disorder prediction 79 111 - -
Vimu11g01694 540 Gene3D Ubiquitin Conjugating Enzyme 199 499 IPR016135 -
Vimu11g01694 540 SUPERFAMILY UBC-like 224 402 IPR016135 -
Vimu11g01694 540 PANTHER (E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME 174 504 - -
Vimu11g01694 540 MobiDBLite consensus disorder prediction 1 23 - -
Vimu11g01694 540 Pfam Ubiquitin-conjugating enzyme 243 362 IPR000608 -
Vimu11g01694 540 CDD UBCc 241 387 IPR000608 -
Vimu11g01694 540 MobiDBLite consensus disorder prediction 79 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01694 Vimu-Chr11 21902973 21907035 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g01694 194 512 Miscellaneous Gene Families AT2G33770 44.000 6.82e-75 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01694 K10581 - gmx:100812552 727.628
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g01694 11 21902973 21907035 Vimu11g01694 11 21902973 21907035 ECH