Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01689 ATGAGGGTGTGGGAGAGAGCCGCTGGAGCCATAAAAGACAAGAACAGCATATGGGTTGCAAAGTTCGCGCGAAAGAGTGAGTTCCACAACCCTAATTTAGAAGCTGTGGTGATCAAGGCTACAAGCCATGATGATCAACGCATAGATTCTAAGAACGTGCAGAAAGTGTTCCATTGGTTACGAACCTCACCCTCGTACCTGAAACCTATTGTCTGGTCTCTCTCCATGCGCATGCAGAAGACTCGAAGCTGGGTGGTCGCGATGAAAGGCTTGATGCTCATCCATGGCATTTTCTGTTGTGACATCCCGATAGTGCAACGCATGGGGAGGTTACCCTTTGACCTCTCAAACTTTTCTGATGCCCATTTGAGCACCGAGAAGGCTTGGGACTTCAACGATTTCATTCGTGCTTATTTTGCGTATTTGGATCAAAGATCGGCGTTCGTATCCTCCGAGGTTAGAAAGCTAAAGAAGAATAACAAGGAGATGCAGGTGGAGGAGACGTTGATGGAAGAGCTTGAGGGTTTGCAGAAGTTGCAAGGGTTGGTTGATATGCTTCTTCAGATCAGGCCTCGGAACGAGAACATGAATGTTGGTTTGGTTCTTGAAGCCATGGACTGTGTTATAGTTGAGGTTTTCGGTGTGTATAGTAAGTTTTGCAACAAGATTGCCAAGGTTTTGTTGAGGATATATGAAATGGGTGGGAGGATGGAAGCAAGTATTGGTCTCAAGGTTCTTCAGAAAGCATCAATTCAAAGGGAGGAGTTGTCTTCGTTCCTTGAGTTTTGCAAGGATATTGGTGTCCTCAATGCCTCTCAGTGCCCCCAAATTGAAAGAATTTCTCAGGAGGATATTCAAGATCTTGTGAAAATAATCAATGGTGCCTCTTCCAACAAGAAGGATGGTGTTGCGGCAAATGATGAGGACAAAGCTATTGTGGTACGAGATTGTTCTACCATTGTACCTGTTTCACACCAGATGGAGTCCGAGAAGGGTTTGATGACCATCATCACTCACCAATGGGAGGTTTTTGATAATGATGATGATGTGATGTTTGGTGGTAAAGGAATGCATACTGTCTCTGGTGAAAAGGATATTCGCAACACAACCAACCCTTTTGAGGAATCATATCACATTGTGCCTTATGTTTCTGGTCACAATCAACCTCTTCCTGATCTAATTAGTTTTTAA 1191 0.4425 MRVWERAAGAIKDKNSIWVAKFARKSEFHNPNLEAVVIKATSHDDQRIDSKNVQKVFHWLRTSPSYLKPIVWSLSMRMQKTRSWVVAMKGLMLIHGIFCCDIPIVQRMGRLPFDLSNFSDAHLSTEKAWDFNDFIRAYFAYLDQRSAFVSSEVRKLKKNNKEMQVEETLMEELEGLQKLQGLVDMLLQIRPRNENMNVGLVLEAMDCVIVEVFGVYSKFCNKIAKVLLRIYEMGGRMEASIGLKVLQKASIQREELSSFLEFCKDIGVLNASQCPQIERISQEDIQDLVKIINGASSNKKDGVAANDEDKAIVVRDCSTIVPVSHQMESEKGLMTIITHQWEVFDNDDDVMFGGKGMHTVSGEKDIRNTTNPFEESYHIVPYVSGHNQPLPDLISF 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01689 396 SUPERFAMILY GAT-like domain 171 293 - -
Vimu11g01689 396 CDD ANTH_N_AP180_plant 33 148 - -
Vimu11g01689 396 SUPERFAMILY ENTH/VHS domain 32 149 IPR008942 -
Vimu11g01689 396 Gene3D - 5 152 IPR008942 -
Vimu11g01689 396 PANTHER CLATHRIN ASSEMBLY PROTEIN 4 311 IPR045192 GO:0048268|GO:0072583
Vimu11g01689 396 FunFam Putative clathrin assembly protein 157 310 - -
Vimu11g01689 396 FunFam Putative clathrin assembly protein 7 153 - -
Vimu11g01689 396 Coils Coil 153 176 - -
Vimu11g01689 396 SMART enth_2 31 160 IPR013809 -
Vimu11g01689 396 Pfam ANTH domain 33 288 IPR011417 GO:0005543
Vimu11g01689 396 Gene3D ANTH domain 154 309 IPR014712 GO:0005545|GO:0030136|GO:0030276|GO:0048268
Vimu11g01689 396 ProSiteProfiles ENTH domain profile. 25 156 IPR013809 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01689 Vimu-Chr11 21700097 21701855 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01689 - - vra:106768122 627.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g01689 11 21700097 21701855 Vimu11g01689 11 21700097 21701855 ECH