Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01224 ATGGAGATCGCCCACGAACCACCTCCTTCCCTCGACGGAGGCCCCATCCCCGTTGAGTCACTCGCCAATTCCCCGTCGTCGTCTTCCCCTTCCTCCTCCTCTTCCTCCTCCTCCGCTTCGTCGCCACGCGGTTCCAAGGGAAAGGAGATCGAGTCTACCTCTTCGGCGACGGGGACGGCAGCCGTGCCACCCAAGTACGATGACGAGGAGGAGGAGGAAGAGGACGTATGCCGGATTTGCCGGAACCCTGGCGACGCCGAGAATCCACTTCGGTATCCGTGCGCTTGCAGCGGGAGCATCAAGTTTGTGCATCAGGATTGTCTCCTTCAGTGGCTTAATCACAGCAACGCTCGCCAATGCGAGGTCTGCAAGCATGCATTTTCGTTCTCTCCTGTTTATGCTGAGAATGCCCCGGCTAGGTTACCTTTTCAAGAGTTTGTGGTTGGAATGGCAATGAAAGCATGCCATGTTCTTCAATTCTTTTTGCGCCTGAGTTTTGTGCTATCTGTGTGGCTCTTAATTATACCTTTCATAACATTCTGGATATGGCGGTTAGCTTTTGTGAGGAGTTTAGGTGAAGCCCAGAGGTTATTCTTAAGCCATTTATCGACAGCGGTTATCTTGACTGATTGCCTCCATGGTTTTCTACTTTCTGCAAGTATTGTCTTCATTTTTCTTGGGGCCACTTCTTTGAGAGATTACTTTAGGCATTTGCGAGAAATTGGGGGTCAGGATGCTGATAGAGAAGATGAAGTGGACAGAAATGGTGCTCGAATGGCTAGAAGACCACCTGTACAAGCTAATCGAAATGCAAATGGTGATGGGAATGTTGAAGATGCTGGTGGAGCACAAGGAATTGCAGGTGCAGGCCAAGTAATTAGGAGAAATGCTGAAAATGTTGCTGCACGGTGGGAGATGCAAGCTGCACGACTTGAGGCACATGTTGAACAGATGTTTGATGGTCTGGATGATGCTGATGGAGCAGAAGATGTTCCCTTTGATGAACTTGTTGGCATGCAGGGTCCAGTTTTTCATTTGGTTGAAAATGCATTTACTGTGCTGGCGAGCAATATGATTTTCCTTGGTGTTGTAATCTTTGTGCCATTCTCATTGGGTCGTATCATACTCCATTACCTAGCCTGGTTCTTCTCAACTGCTAGTGGTCCTGTGTTGTCAGCTGTGGCCCCACTTGCAGACACATCTCTTTCTCTGGCAAATATTACATTAAAGAATGCATTAACAGCTGTTAAAAACTTGTCATCTGAAACTCAAGAAAGTGGGCCAATTGGTCAGGTTGCAGAAATGGTGAAAGCGAATGCTAGTGAGTTGAGTGAAATGTCAAACAACATAACATCTGCCTCAGCTGTTATCTTGAAAGGAGGCTCGATTGGAACCTCAAGGCTTTCTGATGTTACTACTCTAGCTATTGGATATGTTTTTATAATCACTCTAATTTTCTGCTACTTTGGGATTGTTGCTTTAATTCGTTACACAAAGGGTGAGCCTTTGACCATGGGAAGGTTTTATGGCATTGCTTCTATTGCAGAGACAATACCATCCCTCTTCAGGCAGTTTTTGGCAGCAATGAAGCATTTGATGACCATGGTTAAGGTTGCTTTCCTCTTAATCATTGAGCTTGGGGTATTTCCGTTGATGTGTGGGTGGTGGCTTGATGTTTGTACCATTCAGATGTTTGGGAAGACAATGGTTCACAGAGTTCAGTTCTTCTCTGCATCCCCTTTAGCAAGCTCATTGGTTCATTGGGTTGTTGGGATTGTGTACATGTTACAGATTAGCATATTTGTCAGCCTTCTTAGAGGGGTTTTACGTAATGGAGTTTTGTACTTCCTTCGGGACCCTGCGGATCCAAACTATAATCCATTTCGTGATCTTATAGATGATCCTGTGCACAAACATGCTCGCAGGGTTTTATTATCTGTTGCAGTTTATGGGAGTCTGATTGTGATGCTGGTATTCTTGCCTGTCAAACTTGCCATGCGGATGGCACCTTCCATTTTCCCACTTGACATATCGGTATCTGATCCGTTCACTGAAATTCCAGCTGACATGCTTCTCTTTCAGATTTGTATCCCATTTGCTATTGAGCATTTTAAATTGAGGACAACTATAAAATCCCTACTGCGCTATTGGTTTACTGCTGTTGGTTGGGCTCTTGGTTTGATTGATTTCTTACTGCCTAGACCTGATGACAGTGTAAATCAAGATAATGGAAATGGAGAGCCAGGTAGGCAAGATAGGCTACAAGTAGTACAAGCTGGAGTGCATGATCTGGGCTTGATGCCATTTGCAGGTGATAATTTGAACAGGGCCGTTAGCACAGTTGGAGAACTGAATGCTGTAGAGGATTATGAGAATGATGAGCAATCGGACTCTGATTATGCCTTTGTGCTTCGTATTGTTCTTTTGCTGGTGATTGCTTGGATGACACTCCTGGTCTTCAACTCTGCTCTGATAGTTGTACCAATTTCACTAGGCCGGGCACTTTTCAATTTTATTCCTCGCCTTCCCATAACTCATGGGATTAAATGCAATGATCTGTATGCATTTATCATTGGAAGCTATGTAATCTGGACTGCTGTTGCTGGAGTTAGATACTCAATTGAACAGATAAGAAAAAGGAGAGCTTCTGTTTTGTTTGGCCAAGTATGGAAATGGTGTGGCATTCTGGTGAAGAGTTCTGCACTTCTGTCTATATGGATATTCATTATCCCAGTGCTTATTGGTCTTCTCTTTGAGCTTTTGGTTATTGTGCCAATGAGAGTTCCTGTGGATGAAAGTCCAGTATTCCTCCTTTATCAAGACTGGGCATTAGGCCTTATATTTCTGAAGATATGGACTAGATTGGTTATGTTGGACCACATGATGCCTTTGGTGGATGAAAGTTGGCGAGTCAAATTTGAGAGGGTGAGAGAGGATGGGTTTTCCAGGTTGCAAGGTCTCTGGGTCCTTCGGGAGATTGTACTTCCGATCATAATGAAGTTGTTGACGGCATTATGTGTACCTTATGTTTTGGCCAAAGGTGTATTCCCAGTGCTTGGGTATCCGTTGGTGATCAATTCTGCTGTCTATCGGTTTGCATGGTTGGGATGCCTCTGTTTCAGCTTCTTGTGCTTCTGTGCCAAAAGATTCCATGTCTGGTTCACAAATCTCCATAACTCAATACGCGATGACCGGTATCTCATTGGCCGAAGGTTGCATAACTACGGAGAACATGTTGAGAAAGCAAATGAAGCAGGAACTTCTACAGAATTGCAGGACACTATTTTACTTGGTACGGGCTTAAATCAACAAGATCATGATGCAGATGTTGGACTACGATTGAGGCGTGTAAATCATCAACAGGTAGGCTGA 3372 0.4463 MEIAHEPPPSLDGGPIPVESLANSPSSSSPSSSSSSSSASSPRGSKGKEIESTSSATGTAAVPPKYDDEEEEEEDVCRICRNPGDAENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFSPVYAENAPARLPFQEFVVGMAMKACHVLQFFLRLSFVLSVWLLIIPFITFWIWRLAFVRSLGEAQRLFLSHLSTAVILTDCLHGFLLSASIVFIFLGATSLRDYFRHLREIGGQDADREDEVDRNGARMARRPPVQANRNANGDGNVEDAGGAQGIAGAGQVIRRNAENVAARWEMQAARLEAHVEQMFDGLDDADGAEDVPFDELVGMQGPVFHLVENAFTVLASNMIFLGVVIFVPFSLGRIILHYLAWFFSTASGPVLSAVAPLADTSLSLANITLKNALTAVKNLSSETQESGPIGQVAEMVKANASELSEMSNNITSASAVILKGGSIGTSRLSDVTTLAIGYVFIITLIFCYFGIVALIRYTKGEPLTMGRFYGIASIAETIPSLFRQFLAAMKHLMTMVKVAFLLIIELGVFPLMCGWWLDVCTIQMFGKTMVHRVQFFSASPLASSLVHWVVGIVYMLQISIFVSLLRGVLRNGVLYFLRDPADPNYNPFRDLIDDPVHKHARRVLLSVAVYGSLIVMLVFLPVKLAMRMAPSIFPLDISVSDPFTEIPADMLLFQICIPFAIEHFKLRTTIKSLLRYWFTAVGWALGLIDFLLPRPDDSVNQDNGNGEPGRQDRLQVVQAGVHDLGLMPFAGDNLNRAVSTVGELNAVEDYENDEQSDSDYAFVLRIVLLLVIAWMTLLVFNSALIVVPISLGRALFNFIPRLPITHGIKCNDLYAFIIGSYVIWTAVAGVRYSIEQIRKRRASVLFGQVWKWCGILVKSSALLSIWIFIIPVLIGLLFELLVIVPMRVPVDESPVFLLYQDWALGLIFLKIWTRLVMLDHMMPLVDESWRVKFERVREDGFSRLQGLWVLREIVLPIIMKLLTALCVPYVLAKGVFPVLGYPLVINSAVYRFAWLGCLCFSFLCFCAKRFHVWFTNLHNSIRDDRYLIGRRLHNYGEHVEKANEAGTSTELQDTILLGTGLNQQDHDADVGLRLRRVNHQQVG 1123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01224 1123 CDD RING_CH-C4HC3_MARCH6 76 125 - -
Vimu11g01224 1123 SUPERFAMILY RING/U-box 71 127 - -
Vimu11g01224 1123 Coils Coil 294 314 - -
Vimu11g01224 1123 MobiDBLite consensus disorder prediction 20 60 - -
Vimu11g01224 1123 ProSiteProfiles Zinc finger RING-CH-type profile. 69 130 IPR011016 GO:0008270
Vimu11g01224 1123 Pfam RING-variant domain 77 123 IPR011016 GO:0008270
Vimu11g01224 1123 PANTHER SSM4 PROTEIN 58 1078 - -
Vimu11g01224 1123 SMART ringv_2 76 124 IPR011016 GO:0008270
Vimu11g01224 1123 MobiDBLite consensus disorder prediction 246 283 - -
Vimu11g01224 1123 MobiDBLite consensus disorder prediction 1 70 - -
Vimu11g01224 1123 ProSiteProfiles Zinc finger RING-type profile. 77 124 IPR001841 -
Vimu11g01224 1123 FunFam Probable E3 ubiquitin ligase SUD1 62 135 - -
Vimu11g01224 1123 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 62 135 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01224 Vimu-Chr11 13363302 13369928 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01224 K10661 - gmx:100813205 2044.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g01224 11 13363302 13369928 Vimu11g01224 11 13363302 13369928 ECH