Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01212 ATGCTCTACGGGCTTCTTCCTTTGTTGGGAATGTTGGCTTTTCTTGGAATGCAGCTTCCTGTCATAATGGCTGATTGCCCTTTGAATTTTACTGGTTCAAACTTCACACTTACATCCTCTCTATGCTCTACCCATGGTGACAGAGGAAAATGCTGCCGATACATCAATACTAATGTTGCAATTGCTGTTTCTCGTTTTGCTAATGCAACAGGCAACCTAGGGGTCTCTCAAAATGCGACTGACATCTGCCTCCAAACCATATTTCAAACCTTGCAACTTAATGGAGTTGCACAAAATGCAACAGCTTTCTGTGGTTTCGGAACAAAAATTCCTGTTAATTATGAATGCAAGGGCAGAACTAGTGTTGTTCAAATGCTGCAATCCCCCAGATTTACGGAGGTCACAAAAAATTGCAAAGCGCCACTTGGAGAGGAAAGTAAATGTAAGAAGTGTTTAAATGCTGGCATTGGTTATCTCCATCATATCGGAATTGAAGATAATATAACACTAAGTACATGTCGTGATGCCACTTTTGCTGCATTAGCAAGCCAAGTTGATGAGATATCTACTATTGACATTGCAATTTGTTTCTTTGGGGTTCAAGGACTTCTCAAGCTTCCTGTTTTAGAGTCAACCCCATCCTTGCCTGCTCCTAAGGCTTCTCCAAGCTCACCTGTTTCTGATGGCCCAAGTCAACCATTGTTAAGTGCACCTTTAAAGGGAAAGCATCATTCATATCGTTTGACGTTAGTTCCAGGTATTGCTATTGCCGTTACAGCTGTTGCTGTTATCACACTCATAGTCTTGATAGTTCTAATTCGCCAGAAAAGCAGAGAGCTAGACAAGCCTGATAATTTTGGTAAACCCTGTTCGAAAACCTTACCTCCTTGTACAACATGGAAATTTCAGGAAGGTTCTTCATCTATGTTCCGAAAATTCAGCTACAAGGAGATAAAAAGGGCTACAGAGGATTTTAGTACTATCATTGGTCAAGGGGGATTTGGAACTGTGTATAAAGCTGATTTTTCTGATGGCCTGGTCGCAGCAGTAAAACGGATGAACAGAATCTCTGAGCAGGGTGAGGATGAGTTCTGCAGAGAAATTGAACTTCTTGCCCGGCTGCACCATCGGCATCTTGTTGCCTTGAGAGGCTTTTGCATTCAAAAACGTGAGAGGTTTCTATTGTATGAGTACATGGGAAATGGAAGCTTGAAAGATCATCTTCATTCCCCTGGTAAAACACCTTTAAGTTGGCGAACAAGAATCCAAATTGCCATTGATGTGGCCAATGCCCTGGAGTACCTCCATTTCTATTGCGATCCTCCTCTGTGTCACAGAGATATTAAATCCAGCAACACTTTACTGGATGAGAACTTTGTTGCCAAGATAGCTGATTTTGGTCTTGCACAAGCTTCAAAAGATGGATCGGTATGCTTTGAACCTGTAAACACTGAAATTCGGGGAACTCCGGGTTATATGGATCCTGAGTATGTTGTTACTCAAGAGCTCACCGAGAAAAGTGACATATACAGTTTTGGGGTATTACTACTTGAAATTGTAACAGGAAGACGAGCCATTCAAGATAATAAGAATCTAGTAGAATGGGCCCAACCATACATGGAATCAGATACGAGATTATTGGAGCTAGTAGATCCCAACGTAAGGGAGTCTTTTGACTTGGATCAGCTCCAAACAGTAATCTCTATAGTAGCATGGTGCACCCATAGAGAAGGAAGGGCAAGGCCTTCAATAAAACAGGTACTTAGGCTTCTGTATGAGACATCAGAACCAATGCACAGTGAGTTTCTACAAGCTGTTGAAGATGAAGAATGTCAGGGAAGTCAGCACAGAGGCAGAAGAAGCAAGGGGAAAATGCTCAGAAATGAAGCATTGTTTCACAGCGGAGAGGGAAGATATCTTGCTTCATCTTCGAGTACATCCCGGTCATATTGCAGTAGAAGTTTTTTACTTGAGACTGGCTCTCCACAGTCTCCGCCAAATATGTTCTCTGTGTGA 2016 0.4216 MLYGLLPLLGMLAFLGMQLPVIMADCPLNFTGSNFTLTSSLCSTHGDRGKCCRYINTNVAIAVSRFANATGNLGVSQNATDICLQTIFQTLQLNGVAQNATAFCGFGTKIPVNYECKGRTSVVQMLQSPRFTEVTKNCKAPLGEESKCKKCLNAGIGYLHHIGIEDNITLSTCRDATFAALASQVDEISTIDIAICFFGVQGLLKLPVLESTPSLPAPKASPSSPVSDGPSQPLLSAPLKGKHHSYRLTLVPGIAIAVTAVAVITLIVLIVLIRQKSRELDKPDNFGKPCSKTLPPCTTWKFQEGSSSMFRKFSYKEIKRATEDFSTIIGQGGFGTVYKADFSDGLVAAVKRMNRISEQGEDEFCREIELLARLHHRHLVALRGFCIQKRERFLLYEYMGNGSLKDHLHSPGKTPLSWRTRIQIAIDVANALEYLHFYCDPPLCHRDIKSSNTLLDENFVAKIADFGLAQASKDGSVCFEPVNTEIRGTPGYMDPEYVVTQELTEKSDIYSFGVLLLEIVTGRRAIQDNKNLVEWAQPYMESDTRLLELVDPNVRESFDLDQLQTVISIVAWCTHREGRARPSIKQVLRLLYETSEPMHSEFLQAVEDEECQGSQHRGRRSKGKMLRNEALFHSGEGRYLASSSSTSRSYCSRSFLLETGSPQSPPNMFSV 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01212 671 Gene3D Transferase(Phosphotransferase) domain 1 399 615 - -
Vimu11g01212 671 SMART serkin_6 323 591 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g01212 671 FunFam Putative receptor-like protein kinase 291 398 - -
Vimu11g01212 671 Pfam Protein kinase domain 327 589 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g01212 671 Gene3D Phosphorylase Kinase; domain 1 297 398 - -
Vimu11g01212 671 SUPERFAMILY Protein kinase-like (PK-like) 304 594 IPR011009 -
Vimu11g01212 671 ProSitePatterns Protein kinases ATP-binding region signature. 329 351 IPR017441 GO:0005524
Vimu11g01212 671 PANTHER OS01G0750732 PROTEIN 168 611 - -
Vimu11g01212 671 ProSitePatterns Serine/Threonine protein kinases active-site signature. 443 455 IPR008271 GO:0004672|GO:0006468
Vimu11g01212 671 FunFam Putative receptor-like protein kinase 399 599 - -
Vimu11g01212 671 CDD STKc_IRAK 329 591 - -
Vimu11g01212 671 ProSiteProfiles Protein kinase domain profile. 323 602 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g01212 671 Pfam SPARK 25 162 IPR043891 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01212 Vimu-Chr11 13196314 13202072 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g01212 24 670 Receptor kinase-like Gene Family AT3G19300 59.447 0.0 757
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_URK-1 Vimu11g01212 Pkinase 3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01212 - - gmx:100807955 1206.43