Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01186 ATGTCAGGGACAAGTTTCCTTGATTTCCAATACAACCTCTCAAGGAGAAAATACTTAAGGAAGCCATCACGTCTATTCTCCCGGGACAGGCAGAACTCTGGGGTGAATAGTGTATATCTTCAGCCTAACGCTGATGAGATGAAGCGAGTGTTTGACAAATTTGATTCCAATAAAGATGGGAAAATTTCTCAACAGGAGTACAAAGTGACCATGAAGGCTCTAGGCATGGGGGACTCGGTTCATGAAGTGCGAAATATATTCAAGGTGGTTGATTTGGATGGAGATGGATTCATCAACTTCAAGGAGTTTATGGAAGCTCAGAACAAGGGTGGTGGAGTTAGGGCGATGGATATACATAGTGCCTTTCGGACGTTTGATAGGAATGGTGATGGTAAAATAAGTGCAGAAGAAATCAAAGAAATGCTAGGAAGGTTGGGAGAAAGGTGTACCATCGAGGACTGCCGTCGAATGGTGAGAGCTGTGGACACTGATGGAGATGGCATGGTTGACATGGACGAGTTCACCACTATGATGACACATACCCTCAAACCTCTTTGA 558 0.4427 MSGTSFLDFQYNLSRRKYLRKPSRLFSRDRQNSGVNSVYLQPNADEMKRVFDKFDSNKDGKISQQEYKVTMKALGMGDSVHEVRNIFKVVDLDGDGFINFKEFMEAQNKGGGVRAMDIHSAFRTFDRNGDGKISAEEIKEMLGRLGERCTIEDCRRMVRAVDTDGDGMVDMDEFTTMMTHTLKPL 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01186 185 SMART efh_1 153 181 IPR002048 GO:0005509
Vimu11g01186 185 SMART efh_1 117 145 IPR002048 GO:0005509
Vimu11g01186 185 SMART efh_1 46 74 IPR002048 GO:0005509
Vimu11g01186 185 SMART efh_1 82 110 IPR002048 GO:0005509
Vimu11g01186 185 SUPERFAMILY EF-hand 45 180 IPR011992 -
Vimu11g01186 185 ProSiteProfiles EF-hand calcium-binding domain profile. 113 148 IPR002048 GO:0005509
Vimu11g01186 185 ProSiteProfiles EF-hand calcium-binding domain profile. 42 77 IPR002048 GO:0005509
Vimu11g01186 185 Gene3D - 6 110 - -
Vimu11g01186 185 ProSitePatterns EF-hand calcium-binding domain. 126 138 IPR018247 -
Vimu11g01186 185 Gene3D - 113 184 - -
Vimu11g01186 185 ProSitePatterns EF-hand calcium-binding domain. 162 174 IPR018247 -
Vimu11g01186 185 ProSiteProfiles EF-hand calcium-binding domain profile. 149 184 IPR002048 GO:0005509
Vimu11g01186 185 ProSiteProfiles EF-hand calcium-binding domain profile. 78 112 IPR002048 GO:0005509
Vimu11g01186 185 FunFam calmodulin-like protein 3 112 182 - -
Vimu11g01186 185 ProSitePatterns EF-hand calcium-binding domain. 55 67 IPR018247 -
Vimu11g01186 185 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 117 180 - -
Vimu11g01186 185 Pfam EF-hand domain pair 46 106 IPR002048 GO:0005509
Vimu11g01186 185 Pfam EF-hand domain pair 117 178 IPR002048 GO:0005509
Vimu11g01186 185 CDD EFh 117 179 IPR002048 GO:0005509
Vimu11g01186 185 CDD EFh 46 106 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01186 Vimu-Chr11 12845940 12846497 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g01186 1 181 EF-hand Containing Proteins AT2G15680 59.459 1.07e-79 233
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01186 K13448 - gmx:100803158 335.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g01186 11 12845940 12846497 Vimu11g01186 11 12845940 12846497 ECH