Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01076 ATGGCGCAGGTGCAACCTGAACACAAGATCCATGACAACTCAGAAAAGGACACCCAAGAAGAAACTGGCAACTCCAGCTTCAAATTCAATGCTCAAGCGCCCGAATTCATACCAAGATCACAATCCCAGATTCCGATTTCGGGTTATTTCTATCCCTGTTTCCAGATTCTCGGTGGCTGTGCTGATTCTGATTGGTTCTTAGTTGGGGACCAAGATCCTTCTTGTTTGATCCCCACCGCCAGTGTTGCGCTTCCCAATTCCTCCAAGAATATCCTTACCCCCGATCTTCAGCAAAAGATCGTCAAACAGGTGGAATATCAGTTCAGTGACATGAGTTTGCTAGCAAATGAATCTTTCCAGAAACAGATGAATAAAGATCCTGAAGGATATGTTCCAATAACCGTGATTGCGTCTACTAAAAAGGTTAAAGCCCTCGTTAATAACATTCATATGCTTACTCAAGCTATCCGTTCATCTTCAAAACTTGTTTTGAGCGCTGATGGCAAGAAGGTTAAACGCAAACATCCTTTCACTGATAAGGAAAAAGAAGACTTGCAGTCTCGCACTGTTGTTGCGGAGAATTTACCTGACGATCATTCCCATCAGAATCTTCAAAAAATTTTTAGTACAGTTGGAAGCGTGAAAACGATTAGAATATGCCATCCTCAGGAGGCTAATACTTCTCGCCCAAAGTCTGATTTCTTCGTTAGTAACAAGCTCCATGCACTTGTGGAGTATGACACATCAGATATAGCTGACAAAGCTGTTGAGAAGTTAAATGATGAAAGGAATTGGAGGAAAGGGATGCGAGTAAGGCTGCTCCTAAGGTGCTCGCCCAAATCTGTTCTGAAGAGTAGAAAGTCTGAATTTGATGGATATCTAGAAGATGAAGAGATTCTAAATTCTGAAAGTGCTGAAGATCCTTCTCACTCAAACAACGCTGAATTGTTTGATACAAATGTTGATGAAAACTCGGTAGGATCTAAGAAAGGATGGGCTAGAGGACGTGGAAAGGGGAGAGGACGCACTCAAGGTCGTGGCCTGCTTGCTCCACCTTTTCAATCAAGCAGCACTGCTCTGTGTGATGCTCATACTAAGCCCAATACCAAGGGCCCAAGAATGCCAGATGGGACAAGAGGATTCACCATGGGACGTGGAAAGCCAATTAGTTCTTCTGCTCTAGTCGTCTCATCTCAAGACTGA 1203 0.4347 MAQVQPEHKIHDNSEKDTQEETGNSSFKFNAQAPEFIPRSQSQIPISGYFYPCFQILGGCADSDWFLVGDQDPSCLIPTASVALPNSSKNILTPDLQQKIVKQVEYQFSDMSLLANESFQKQMNKDPEGYVPITVIASTKKVKALVNNIHMLTQAIRSSSKLVLSADGKKVKRKHPFTDKEKEDLQSRTVVAENLPDDHSHQNLQKIFSTVGSVKTIRICHPQEANTSRPKSDFFVSNKLHALVEYDTSDIADKAVEKLNDERNWRKGMRVRLLLRCSPKSVLKSRKSEFDGYLEDEEILNSESAEDPSHSNNAELFDTNVDENSVGSKKGWARGRGKGRGRTQGRGLLAPPFQSSSTALCDAHTKPNTKGPRMPDGTRGFTMGRGKPISSSALVVSSQD 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01076 400 CDD RRM_La_like_plant 188 275 IPR034878 GO:0003723
Vimu11g01076 400 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 188 273 IPR000504 GO:0003723
Vimu11g01076 400 Gene3D - 179 281 IPR012677 -
Vimu11g01076 400 MobiDBLite consensus disorder prediction 349 364 - -
Vimu11g01076 400 Pfam La domain 100 157 IPR006630 -
Vimu11g01076 400 MobiDBLite consensus disorder prediction 1 24 - -
Vimu11g01076 400 ProSiteProfiles La-type HTH domain profile. 90 181 IPR006630 -
Vimu11g01076 400 PRINTS Lupus La protein signature 160 173 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Vimu11g01076 400 PRINTS Lupus La protein signature 129 144 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Vimu11g01076 400 PRINTS Lupus La protein signature 182 198 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Vimu11g01076 400 PRINTS Lupus La protein signature 103 120 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Vimu11g01076 400 SUPERFAMILY RNA-binding domain, RBD 172 274 IPR035979 GO:0003676
Vimu11g01076 400 SMART rrm1_1 189 274 IPR000504 GO:0003723
Vimu11g01076 400 MobiDBLite consensus disorder prediction 322 400 - -
Vimu11g01076 400 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 193 261 IPR000504 GO:0003723
Vimu11g01076 400 MobiDBLite consensus disorder prediction 8 22 - -
Vimu11g01076 400 Gene3D - 93 178 IPR036388 -
Vimu11g01076 400 SMART la 94 174 IPR006630 -
Vimu11g01076 400 PANTHER LUPUS LA PROTEIN-RELATED 34 367 IPR045180 -
Vimu11g01076 400 SUPERFAMILY "Winged helix" DNA-binding domain 92 177 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01076 Vimu-Chr11 11436084 11439008 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01076 K15191 - gmx:100796786 668.307
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g01076 11 11436084 11439008 Vimu11g01076 11 11436084 11439008 ECH