Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00987 TTGAAGAGCCCTTCCGATGCTCCTCACCGGACCCATTCGTCCATGAATCGTAAAATGGAGGCAGTGGCTGAAAACCCCGCAAGGTCGAGGGGGTTAAAGCACGCATCCATAAACCCTAACAAACCTCAACCGTCCCCAATTCCCAAACCCAACCAATTCCCCTCCCACCTCGACGCGCCCAACGTATCGTCTTCCGCTCGTGCCCTTTGTGACATCCTCACACGCGCCTCCCCTCACGACATCGAAGCCGCCCTCTCCTCCTCGGGAATCGATCCCGAGGAGGACCTCGTCAAAGAGGTCCTGAAACTCTCCTACAATTACCCTTCCTCCGCCGTCAAGTTCTTCCGGTGGGCCGGGCGAGGCAAAAAGCACCCGGCTCATACCTGGAACTTGATGGTCGACCTGCTGGGTAAAAACCAGCTTTTCGAGCCCATGTGGGACGCCGTCAGGTCCATGAAACAGGAAGAGAAACTTTCTCTCTCCACCTTCGCTTCCGTATTCCATAGCTACTCCGCCGCCGGTAGGTTTAACGAGGCCGTCATGAGCTTCGACGTCATGGACAGGTACGGCGTCAAGCAGGACGTGGTGGCCGTTAACTCGCTCCTCAGCGCCATTTGCTGTGAGGACAACCAAACATCCGTGGGCGTCGAGTTTCTCGAGAGCATCAAGGCGAAGGTGTCGCCTGATGGCGACACCTTTGCCATTCTTCTCGAAGGGTGGCAAAAGGAAGGCAATGCTGCTAAAGCCAAGATCACGTTTGGTGATATGGTGGCTCAAGTTGGCTGGAACAAGGACAATGTTGCTGCCTACGACGCGTTTTTGATGACCCTCTTTAGCGCTGACCTTATGGATGATGTTGTCAGGTTCCTTCAGGCTATGAAGGACCATGGTTGCTTCCCAGGTTTGAAATTCTTTACCAACGCGCTTGACGTTCTTGTCAAGCGAAACGACGCCCATCACGCTATCCCTATGTGGGATGTGATGGTCAGTGGCGAGTTAGTGCCTAATTTAATCATGTATAATGCCATGATTGGGTTGCTCTGCAACAATGTTGCTATTGATCACGCCATTCGCCTGCTCGATGAGATGGCTTTCCATGGCGCTTTTCCGGACTCCCTTACCTACAACATGATCTTTGAGTGCTTGGTGAAGAACAAGAAGGCGCGTGAGACCGGGAGGTTCTTCGCCGAGATGATCAAGAATGAGTGGCCCCCTACCGGCCCTAACTGTGCTGCCGGCATTGCAATGTTGTTTGAATGTGATGATCCTGAAGCAGCGCATGAAATTTGGAGTTATGTTGTTGAGAATCATGTCAAGCCGCTTGATGAGAGTGCGAATGCCATGCTAGTTGGACTTTGTAACTTGAGTAGATTTTCGGAGGTTAAGAGGTTGGCTGAGGATGTGCTTTATAGAAGGATCAAGGTGTATGAATCTACAATGACATTCCTGAAGGATGCCTTCTATAAAGAAGGTAGAAGTGCAAGAGACAAATATGATAGTATTTTTAGGAAGTGGAAAGCTCATGTCCAGTTGTAA 1536 0.5111 MKSPSDAPHRTHSSMNRKMEAVAENPARSRGLKHASINPNKPQPSPIPKPNQFPSHLDAPNVSSSARALCDILTRASPHDIEAALSSSGIDPEEDLVKEVLKLSYNYPSSAVKFFRWAGRGKKHPAHTWNLMVDLLGKNQLFEPMWDAVRSMKQEEKLSLSTFASVFHSYSAAGRFNEAVMSFDVMDRYGVKQDVVAVNSLLSAICCEDNQTSVGVEFLESIKAKVSPDGDTFAILLEGWQKEGNAAKAKITFGDMVAQVGWNKDNVAAYDAFLMTLFSADLMDDVVRFLQAMKDHGCFPGLKFFTNALDVLVKRNDAHHAIPMWDVMVSGELVPNLIMYNAMIGLLCNNVAIDHAIRLLDEMAFHGAFPDSLTYNMIFECLVKNKKARETGRFFAEMIKNEWPPTGPNCAAGIAMLFECDDPEAAHEIWSYVVENHVKPLDESANAMLVGLCNLSRFSEVKRLAEDVLYRRIKVYESTMTFLKDAFYKEGRSARDKYDSIFRKWKAHVQL 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00987 511 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 266 300 IPR002885 -
Vimu11g00987 511 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 159 193 IPR002885 -
Vimu11g00987 511 Pfam PPR repeat 162 191 IPR002885 -
Vimu11g00987 511 NCBIfam pentatricopeptide repeat 374 406 IPR002885 -
Vimu11g00987 511 MobiDBLite consensus disorder prediction 1 17 - -
Vimu11g00987 511 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 336 370 IPR002885 -
Vimu11g00987 511 Gene3D Tetratricopeptide repeat domain 305 509 IPR011990 GO:0005515
Vimu11g00987 511 Gene3D Tetratricopeptide repeat domain 103 265 IPR011990 GO:0005515
Vimu11g00987 511 MobiDBLite consensus disorder prediction 1 60 - -
Vimu11g00987 511 Pfam PPR repeat family 335 384 IPR002885 -
Vimu11g00987 511 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 371 405 IPR002885 -
Vimu11g00987 511 PANTHER OS01G0970900 PROTEIN 53 209 IPR044578 GO:0008380
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00987 Vimu-Chr11 10267107 10268642 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00987 162 511 Glycosyltransferase AT1G05670 20.278 9.35e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00987 - - vra:106768952 937.176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g00987 11 10267107 10268642 Vimu11g00987 11 10267107 10268642 ECH