Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00979 ATGCACTCAGCAATGGACTTCACTAGGTTCTCCTCTCCTAAATCTCCCCCAATATTCACGCGCCCCCTCACCTGGGTTACCTCCACCGCCCTCCGCCACCAACCTCGCCACCTTCCTCCTCCACCAACCCCCCCTCCGCCACCTCACCCCACTCCTCCGCCACCTCATCCCACTCCTCCGCGAACCTCTAACCACGCCTCTCTCACCCTTCTACCTTCTATTCTAACCAACAGGGTTCTAGATTCTTCCAAATGTAAATCCATTTTGCCCAATTTGTCCCCCCACGAATTCGATCGCTTATTCTTCCCCATCCACCACACCGTTAATCCCAAAACGACACTCGACTTCTTCCGTTTTGCCGCTAACCATTTTAAGTTCCACTTCACCGTTCGCTCCTATTGCCTCCTCCTTCGTTCGCTTCTCGCTTCCGGTTTTTTGCCGCGCGCCAGGTTTTTGCTCACTCGTTTGATCGACGGCCACGTTCCGACGTCGTTTCACGACCACGAGAACAGGCTCCGCGAAATAGCTTCCTCGATGCTGGAGCTGAATCAGGTTTCGGATAAAGGACACGGCGAATTGGATTTGTTGCTCCACATTCTCTGCTCTCAGTACAAGAGTTTCGGCTTCCGTTGCGCTTTTGATATTTTTATCATGTTCTCGAAGAAGAACATTTTCCCGTGTTTGAAAACTTGCAATTTTTTGTTGAGCTCATTGGTGAAGGCCAATGAACTTCAAAAGAGTTATGAGGTTTTTGATGTCATTTGTCAGGGCGTTTTGCCTGATGTTTTCACCTTCACCACGGCAATTAACGCGTTTTGCAAGGGAGGGAGGGTTGGGGACGCTGTGGATTTGTTCCGCAAGATGGAGGAGCTTGGTGTTTCGCCGAATGTGGTTACTTACAACAATGTGATTGATGGGTTGTCCAAAAGTGGGAGGTTAGACGAGGCGTTTCGGTTTAAGGATAGGATGGTTAGGAGCAAGGTGAATCCGAGTGTGGTGACCTACGGTGCGCTCATCAATGGTTTGATGAAGTTTGAGAAGTTTGAGGAGGCGAGTGAAATGTTGGTGGAAATGTATAGCATGGGTTTTACTCCCAATGAGTTTGTGTTTAACTCACTGATTGATGGGTACTGCAGGAAGGGGAATATGATTGAGGCATTGAGGATTAGGGATGAGATGGTATTGAAGGGCTTGAAGCCTAATTCTGTTACTTTTAATACTCTTTTACAGGGTTTTTGCCGGAGCAATCAAATGGAGCAGGCTGAGCAGGTATTGGGGTACCTATTGTCTAGTGGTTTGTCTGTTAACATGGATGCGTGTTCGTATGTGATTCATCAATTATTGGAAAAATCTAGGTTGGATTCGGCATTAAAAATTGTTAGAGAATTGTTGTTGAGGAACATCAAGGCTAGTGATAGCTTGCTAACCCTCTTGGTCTGCGGACTTTGTAAATGTGAAAAACATTTGGAGGCGATTGAGCTTTGGTTTATGCTGGCAAGTAAAGGTCTTGCTGCCAATACGGTGACCTCAAATGCGCTTCTCCATGGACTTTGTGAACGAGAGGGCATGGAGAAAGTTTTCGAAATACTCAAACGAATGATTGAAAATGGTTTCGTCCTGGATAGGATCTCATACAACTCACTTATTTTTGGTTGTTGTAAATGGGGTAAAATTGGTGTAGCTTTCCAACTCAAGGAAAAGATGGTTCAGCAAGAATTCCAACCAGATACATATACCTACAATTTCCTAATGAAAGGGTTGGCTGATATGGGTAAGATAGATGATGTTCATAGGCTTTTGCATGAAGCCAAAGAATATGGCCTAGTTCCCAATGTATATACACATGCACTTTTATTAGAAGGATATTGTAAGGCTGATCGGATTGAAGATGCTGTGAAATTGTTTAAGAAATTAGTTGATGAGAAAGTAGAGCTAAGTTCTGTTGTATATAACATACTTATTGCAGCCTACTGTAGATTTGGGAAGCTGAAGGAAGCTTTCGAACTGTGTGATGCTATGAAAAGTGGGGGCATGCCTCCTACCTGTGCCACATATTCTTCTCTAATACATGGAATGTGCTGTATTGGCTGTGTGGATGAAGCAAAGGAAACTTTTGAAGAAATGAGAAATGAAGGCTTGCTTCCAAATATATTTTGTTATACTGCTCTAATTGGTGGTTACTGTAAGTTAGGTCAGATGGATAAAGTGGGGAGTATATTAATGGATATGTCTTCAAACGGTATACAACCTAATAAAATTACTTACACTATTATGATTGATGGATATTGTAAATTAGGAAATGTGAAAGAGGCGACAAGACTTTTAAATCAGATGATAAGAAATGGAATAGCTCCAGATACCATCACTTACAATGCACTGCAAAAGGGATATTGCAAGGAAAGGGAGCTAGAAGTTACTTTACAGAGTGATCATATGTCTAACACGGGACTACATTTGGAAGAAGAAATTACTTATGACAAATTGGTTCACAGGTTGCATCCACATACAGTAGTTATCAATAAAAAATGA 2529 0.431 MHSAMDFTRFSSPKSPPIFTRPLTWVTSTALRHQPRHLPPPPTPPPPPHPTPPPPHPTPPRTSNHASLTLLPSILTNRVLDSSKCKSILPNLSPHEFDRLFFPIHHTVNPKTTLDFFRFAANHFKFHFTVRSYCLLLRSLLASGFLPRARFLLTRLIDGHVPTSFHDHENRLREIASSMLELNQVSDKGHGELDLLLHILCSQYKSFGFRCAFDIFIMFSKKNIFPCLKTCNFLLSSLVKANELQKSYEVFDVICQGVLPDVFTFTTAINAFCKGGRVGDAVDLFRKMEELGVSPNVVTYNNVIDGLSKSGRLDEAFRFKDRMVRSKVNPSVVTYGALINGLMKFEKFEEASEMLVEMYSMGFTPNEFVFNSLIDGYCRKGNMIEALRIRDEMVLKGLKPNSVTFNTLLQGFCRSNQMEQAEQVLGYLLSSGLSVNMDACSYVIHQLLEKSRLDSALKIVRELLLRNIKASDSLLTLLVCGLCKCEKHLEAIELWFMLASKGLAANTVTSNALLHGLCEREGMEKVFEILKRMIENGFVLDRISYNSLIFGCCKWGKIGVAFQLKEKMVQQEFQPDTYTYNFLMKGLADMGKIDDVHRLLHEAKEYGLVPNVYTHALLLEGYCKADRIEDAVKLFKKLVDEKVELSSVVYNILIAAYCRFGKLKEAFELCDAMKSGGMPPTCATYSSLIHGMCCIGCVDEAKETFEEMRNEGLLPNIFCYTALIGGYCKLGQMDKVGSILMDMSSNGIQPNKITYTIMIDGYCKLGNVKEATRLLNQMIRNGIAPDTITYNALQKGYCKERELEVTLQSDHMSNTGLHLEEEITYDKLVHRLHPHTVVINKK 842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00979 842 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 296 330 IPR002885 -
Vimu11g00979 842 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 506 540 IPR002885 -
Vimu11g00979 842 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 401 435 IPR002885 -
Vimu11g00979 842 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 576 610 IPR002885 -
Vimu11g00979 842 Pfam PPR repeat family 295 344 IPR002885 -
Vimu11g00979 842 Pfam PPR repeat family 365 414 IPR002885 -
Vimu11g00979 842 Pfam PPR repeat family 542 588 IPR002885 -
Vimu11g00979 842 Pfam PPR repeat family 715 764 IPR002885 -
Vimu11g00979 842 Pfam PPR repeat family 646 693 IPR002885 -
Vimu11g00979 842 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 331 365 IPR002885 -
Vimu11g00979 842 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 751 785 IPR002885 -
Vimu11g00979 842 SUPERFAMILY HCP-like 516 707 - -
Vimu11g00979 842 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 611 645 IPR002885 -
Vimu11g00979 842 Gene3D Tetratricopeptide repeat domain 477 590 IPR011990 GO:0005515
Vimu11g00979 842 Gene3D Tetratricopeptide repeat domain 234 347 IPR011990 GO:0005515
Vimu11g00979 842 Gene3D Tetratricopeptide repeat domain 696 822 IPR011990 GO:0005515
Vimu11g00979 842 Gene3D Tetratricopeptide repeat domain 591 695 IPR011990 GO:0005515
Vimu11g00979 842 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 366 400 IPR002885 -
Vimu11g00979 842 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 646 680 IPR002885 -
Vimu11g00979 842 MobiDBLite consensus disorder prediction 30 66 - -
Vimu11g00979 842 Gene3D Tetratricopeptide repeat domain 348 476 IPR011990 GO:0005515
Vimu11g00979 842 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 681 715 IPR002885 -
Vimu11g00979 842 MobiDBLite consensus disorder prediction 35 61 - -
Vimu11g00979 842 NCBIfam pentatricopeptide repeat 613 646 IPR002885 -
Vimu11g00979 842 NCBIfam pentatricopeptide repeat 648 682 IPR002885 -
Vimu11g00979 842 NCBIfam pentatricopeptide repeat 684 717 IPR002885 -
Vimu11g00979 842 NCBIfam pentatricopeptide repeat 543 577 IPR002885 -
Vimu11g00979 842 NCBIfam pentatricopeptide repeat 718 751 IPR002885 -
Vimu11g00979 842 NCBIfam pentatricopeptide repeat 333 367 IPR002885 -
Vimu11g00979 842 NCBIfam pentatricopeptide repeat 263 297 IPR002885 -
Vimu11g00979 842 NCBIfam pentatricopeptide repeat 298 331 IPR002885 -
Vimu11g00979 842 NCBIfam pentatricopeptide repeat 369 401 IPR002885 -
Vimu11g00979 842 NCBIfam pentatricopeptide repeat 753 787 IPR002885 -
Vimu11g00979 842 NCBIfam pentatricopeptide repeat 511 541 IPR002885 -
Vimu11g00979 842 NCBIfam pentatricopeptide repeat 578 612 IPR002885 -
Vimu11g00979 842 NCBIfam pentatricopeptide repeat 403 436 IPR002885 -
Vimu11g00979 842 Pfam PPR repeat 257 289 IPR002885 -
Vimu11g00979 842 Pfam PPR repeat 607 637 IPR002885 -
Vimu11g00979 842 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 642 832 - -
Vimu11g00979 842 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 261 295 IPR002885 -
Vimu11g00979 842 Pfam PPR repeat 508 538 IPR002885 -
Vimu11g00979 842 Pfam PPR repeat 476 502 IPR002885 -
Vimu11g00979 842 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 541 575 IPR002885 -
Vimu11g00979 842 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 716 750 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00979 277 823 Glycosyltransferase AT1G05670 27.007 5.74e-69 241
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00979 - - gmx:100819570 1308.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g00979 11 10165117 10175537 Vimu11g00979 11 10165117 10175537 ECH