Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00976 ATGTCCATCAGCCCTAAATCACAATATTCTTGCTTTGCCCTAAGTCTCTTAGGAATATTTAATTCATTGATCTTCTCCGAAGCCACCACTCTTGAACTCATTCACCGTGATTCCCCTTTGTCACCCGTCTACGACCCTTCACTCACCCACGCTCAGCGCTTGCGCAATGCTTTGCACCACTCATTGGACCGTGTCAACTCTTTCAAACATGTGAACCCTACAAAAACCCCTTTGACAACCAACGGCGGAGTCTACTTCATGAAATATTCCATTGGAACTCCACCATTTGAGGTTGTCGGAGGCAGTGACCTCATATGGACACAGTGTCGGCCATGCATACGATGTTACAAGCAAAACCCTCCTATCTTTGATCCTAGCAAGTCCAAATCATACCACACATTACCATGCAATTCCTCATTTTGCAGCTCTAGATATGTAGAATCTCCACGATGTAGTAGGGGCACATGTCAGTATTTTTATGATTATTTTGATAATTCTCACACTGCGGGAAACCTTGCCACGGAAACCATAACCATAGGCAACGAAAACCCTATCAGTTCTTCGAAAACTGTATTTGGGTGTGCACACGACAGTGCTGGCACATTCCCGTCGACTGGGTCAGGCATCATTGGTCTTGGTCGTGGGAAGCTTTCACTACTTTCTCAACTTGGTATCAGAAAATTATCTTATTGTCTGCCTCCCAGTCTCAGGAACACCAACAAGATTGTTTTGGGTGAAGATGCTGTGGTTTCCGGTGCTGAAGTGGTTAGAATTCCTTTAGCAACAAAATCTTCCGAATACAGAATCACATTGGAGAGTTTAAGTGTAGGGGAAAAGAGGATTGAATTTGAAAAGCAGGAGGATGTGATGGAGGGAAATATGGCGGTTGATTCTGGAACAACATTCACTTTTCTGCCAGCAGCACTTTATAATGGTTTGGTGTCTGCTCTGGACAAGACAATAAGATATCCGAGGGTGGTTGACCACATGATCACCTTATTCTCAACATGGACGTTTGAAGACTTCAAATCAGCTTTATCAAAAGACATTGGTACTTCTCCAATATCTGAATTGAATTTAAAGGTAGACCGCTATTCTGATATATGCAAATTAGTACTCTACTGTGAAGATGATGCAGACATTATTGAAGCTGTGAAAAATCGGTTCAAAACTGTACAAGTTGATGCTCCTCAAACTCACGAAATAGCAAAGAATGAGAAATTTGATCTGTCCATGAACTTTGCTGCGAAGATTGCTACAAAATCTAAGCAGAACCTCAGAAAAGTAATCATGGCTCTGGAAGCATGCAAAGCACACAAGAGCTTCCGTCTGGAAACGTTTACTTTAACATTCCTAGAAAATTGTCTCCATAGACTAAATCGGCTTACTCTCAGTTCGAGGGAAATTTCAAATGCTTCTCTTGGATTTTGTCCAGCCGAAATTGATCCAACACAGATCAAAGAGGAGAAGTATTTCATCCACAACCACTTAGCATTTGTGGTTAAGCAGCGGTGGTACAGGCAGCGAAGAAGAAATTTTGAGGAAGTGGTTCTCATGGCTGAGTAA 1566 0.4227 MSISPKSQYSCFALSLLGIFNSLIFSEATTLELIHRDSPLSPVYDPSLTHAQRLRNALHHSLDRVNSFKHVNPTKTPLTTNGGVYFMKYSIGTPPFEVVGGSDLIWTQCRPCIRCYKQNPPIFDPSKSKSYHTLPCNSSFCSSRYVESPRCSRGTCQYFYDYFDNSHTAGNLATETITIGNENPISSSKTVFGCAHDSAGTFPSTGSGIIGLGRGKLSLLSQLGIRKLSYCLPPSLRNTNKIVLGEDAVVSGAEVVRIPLATKSSEYRITLESLSVGEKRIEFEKQEDVMEGNMAVDSGTTFTFLPAALYNGLVSALDKTIRYPRVVDHMITLFSTWTFEDFKSALSKDIGTSPISELNLKVDRYSDICKLVLYCEDDADIIEAVKNRFKTVQVDAPQTHEIAKNEKFDLSMNFAAKIATKSKQNLRKVIMALEACKAHKSFRLETFTLTFLENCLHRLNRLTLSSREISNASLGFCPAEIDPTQIKEEKYFIHNHLAFVVKQRWYRQRRRNFEEVVLMAE 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00976 521 CDD pepsin_A_like_plant 85 310 IPR034161 -
Vimu11g00976 521 Gene3D Acid Proteases 251 345 IPR021109 -
Vimu11g00976 521 Pfam Xylanase inhibitor N-terminal 85 245 IPR032861 -
Vimu11g00976 521 SUPERFAMILY Acid proteases 79 339 IPR021109 -
Vimu11g00976 521 Gene3D Acid Proteases 65 246 IPR021109 -
Vimu11g00976 521 ProSiteProfiles Peptidase family A1 domain profile. 85 405 IPR033121 -
Vimu11g00976 521 PANTHER OS07G0603500 PROTEIN-RELATED 31 364 - -
Vimu11g00976 521 Pfam Xylanase inhibitor C-terminal 266 324 IPR032799 -
Vimu11g00976 521 Gene3D - 399 450 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00976 Vimu-Chr11 10125709 10136280 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00976 83 328 Miscellaneous Gene Families AT1G77480 29.434 3.89e-19 88.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00976 - - var:108328338 595.504
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g00976 11 10125709 10136280 Vimu11g00976 11 10125709 10136280 ECH