Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00975 ATGGCTATCAGCCCCAAATCAAAATCCCTTTGGTTTGCCCTAAGTCTCTTAGGAACCCTTGATTTCATAATCTTCTCTGAAGCCACTACTGATCTTCTCATTCACCGTGATTCCCCTTTATCTCCCTTCTACGACCCTTCAATCACCCACTTTGATCGCTTGCACAATGCTTTCCAACGCTCATTCAAACGCATCAACCATCTCAAAGCTGCTGCTGATAACCTTAACCATGGCAGCAACCTACAGGCCCCTATGAAACCTGGTGGTGGAGAGTATCTCATGAAGATTTTCATCGGAACACCACCTGTTGAAGTAATTGGCATAGTTGACACAGGTAGTAACCTCATATGGACACAATGTTTGCCATGCATACATTGCTACAATCAAACTATCCCTCTCTTTAACCCTAGTCTTTCCAAATCATACCAGACAATACCATGCCTACCTACACTTTGTGGCCAAAGACTAGGTTTACCAAGTACACAATGTCCTGATAAGAACACATGTGGTTACAGTTATAATTATGCAGATGGTTCTCATACTGTGGGAAACCTTGCTTTTGAAACAGTAACCTTAGGCATCACCAACCCAATTTCTGTTCCAAATGTTACATTTGGTTGTTCTCACGATACTGGTGGCATATTTGATGCGTCAGGGTCAGGCATAATTGGCCTTGGTGGTGGCAACCTTTCACTGATTTCTCAATTGGGTCCCTATTCATCTGGTGGGAAGAAATTCTCCTATTGTCTAATTATTAATTTTGGAAATGGTTCTTTGGTTTCTGGTCCTGAAGTTGTTACAACTCCCATTATTAATCACGGTGGGTTTTCAGTGACGTTGGAGGCCTTGAGTGTAGGGAAAGAGAGGATTGAATTTGCACCAAAGGGTAATGTTACCAAAGGAAATATGTTGGTTGATACTGGAACAACTTATACTCTTTTGCCATCTGATGTTTATAATGGTTTGGTACATGCTTTAAGCAAAGTAATTAGGGCTAAAAGGGTGCCTGACCCTAACGGTGATTTGGACCATTGTTATGAAAACAGTGACAAAAATATGAAACTCCCCATTATCACAGCACACTTTGAGGGAGGGGATGTGAATTTGCTGGCAGTGAATGCATTCTCTATGGTGAAGAAGGATGTGATATGTTTAGCAATGGTTTCAAACCCATTATCTCTCTTAGGAAACTTGGCTCAGACCAATTTCTTAATAGGATATGACCTTGACTCTCTCACTTTGTCCATTAAACCTACTGATTGTAGCAAGTTATAA 1275 0.411 MAISPKSKSLWFALSLLGTLDFIIFSEATTDLLIHRDSPLSPFYDPSITHFDRLHNAFQRSFKRINHLKAAADNLNHGSNLQAPMKPGGGEYLMKIFIGTPPVEVIGIVDTGSNLIWTQCLPCIHCYNQTIPLFNPSLSKSYQTIPCLPTLCGQRLGLPSTQCPDKNTCGYSYNYADGSHTVGNLAFETVTLGITNPISVPNVTFGCSHDTGGIFDASGSGIIGLGGGNLSLISQLGPYSSGGKKFSYCLIINFGNGSLVSGPEVVTTPIINHGGFSVTLEALSVGKERIEFAPKGNVTKGNMLVDTGTTYTLLPSDVYNGLVHALSKVIRAKRVPDPNGDLDHCYENSDKNMKLPIITAHFEGGDVNLLAVNAFSMVKKDVICLAMVSNPLSLLGNLAQTNFLIGYDLDSLTLSIKPTDCSKL 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00975 424 PANTHER OS07G0603500 PROTEIN-RELATED 33 422 - -
Vimu11g00975 424 Gene3D Acid Proteases 262 424 IPR021109 -
Vimu11g00975 424 FunFam Aspartyl protease AED1 72 262 - -
Vimu11g00975 424 Gene3D Acid Proteases 70 261 IPR021109 -
Vimu11g00975 424 Pfam Xylanase inhibitor C-terminal 276 416 IPR032799 -
Vimu11g00975 424 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 303 314 IPR001969 GO:0004190|GO:0006508
Vimu11g00975 424 Pfam Xylanase inhibitor N-terminal 92 250 IPR032861 -
Vimu11g00975 424 ProSiteProfiles Peptidase family A1 domain profile. 92 417 IPR033121 -
Vimu11g00975 424 SUPERFAMILY Acid proteases 87 422 IPR021109 -
Vimu11g00975 424 CDD pepsin_A_like_plant 91 421 IPR034161 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00975 Vimu-Chr11 10114582 10115892 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00975 90 424 Miscellaneous Gene Families AT1G77480 25.824 3.51e-21 93.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00975 - - var:108339148 751.895
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g00975 11 10114582 10115892 Vimu11g00975 11 10114582 10115892 ECH