Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00953 ATGGCTACACTGCTGAGAAAACTATGCGAATCCGCGTCGCTCAAGCGATCGGGTTCCAATCCGAACCCGAATCCGAACCCATCATCGGAACGCGCGCCATCTCCTCTGGGCGCCTTCGACACTCTCCCCGCCGACATACTCATGCAAATCGTACGACTCGTGGGCCCCAAACACGCCGCCAGACTCAGCCTCCTCAGCAAGTCGTGGCGATCTCTTGTCTCCGACAACGACCTCTGGGTGCACTTTCTCCACACCCACCACCCTCACTCGGCGCTCTTCGCAGAAACCGCTCTCAGCTCCGGCTACCCTCTTCCGACCTTATCTGCTCAGAGCTCGCCACGTGGCTCGCTCCAGCATGTTTATGCCCTCCGTGAACGCCTCCCTCCGTCCGTTGTTATCGACGGGGGTTCTGGCTATTGCAAATTCGGTTGGAGCAAAGGCTCTTCTCCTTCTGGGCGATTCGCGACCTTTCTGGAATTTGGTAACGTTGAAACACCCATGTACACTAGACTTCGACATTTTTTCGGGACTATCTATAACAGGATGCAGGTGAAACCAAGTTCTCAACCAGCTGTTGTTTCTATACCAATTTGTCACTATGATGTAAGTATGACACTTGGTGGTGCATGTAGCAGCCAGGGGCTGCTTTGCACTGCTGCATCACTATACAATGAGCTATTGACAACTAAGGGGACTTTAGCTCTGTATGCTTCAAAACAAACTTCTGGGATTGCTGTTAATATAGGCTTTCAAGTGACATCCATTGTTCCAATTTTAAATGGTAAAGTGATGCGAAAAGTGGGTGTGGAAGTTGTGGGGCTGGGAGCACTAAAGCTTACTGGATTTCTTAGAAAACAAATGCAAGAGAACAACATAAGTTTTGAATCTTTATACACTGTCCGCACTCTGAAAGAGGGAAAACATATCCTATGCAGCAGTAAGAATGGACCCATAAGTCCAGTTGCATGGCAACAGAAGTTATGTTATGTTGCTGCTGACTATGAAGCTGAGCTATTGAAAGATACAAAAGCATCATTTGAAGCTGTAGAAGGGTTGTTTACACTCTCAAAAGAGCGGTTTCAAACAGGGGAGATATTATTCCAGCCACGACTTGCTGGGGTGCGAGCAATGGGTTTGCATCAGGCCATCGCACTTTGTATGGATCACTGCTATTCTGCAGAATTAGCAGTTAACAACGATTGGTACAAGACTGTTGTCTTATCAGGGGGAACTGCCTGTCTACCTGGTTTAGCAGAAAGGTTAGAAAAGGAGCTTCATTCGGCACTTCCTCCATATATATCCAATGGAATTAGAGTCATACCTCCTCCTTTCGGCGTGGATACTGCATGGTTTGGTGGAACGATTATTGGCAGTGTGAGTTATCCACTTAGTCTGATTAATGTTCAATTTTTTTATGCTGCAGAGGACGCCAATTTTAATATCAATCACCAATTGAGCACCTTTCCTGGTCCATGGTGTACCACAAAAAAGCAATTCCGTCAGAAGTCTAAACTTAACCGCATTTGGTGA 1530 0.4706 MATLLRKLCESASLKRSGSNPNPNPNPSSERAPSPLGAFDTLPADILMQIVRLVGPKHAARLSLLSKSWRSLVSDNDLWVHFLHTHHPHSALFAETALSSGYPLPTLSAQSSPRGSLQHVYALRERLPPSVVIDGGSGYCKFGWSKGSSPSGRFATFLEFGNVETPMYTRLRHFFGTIYNRMQVKPSSQPAVVSIPICHYDVSMTLGGACSSQGLLCTAASLYNELLTTKGTLALYASKQTSGIAVNIGFQVTSIVPILNGKVMRKVGVEVVGLGALKLTGFLRKQMQENNISFESLYTVRTLKEGKHILCSSKNGPISPVAWQQKLCYVAADYEAELLKDTKASFEAVEGLFTLSKERFQTGEILFQPRLAGVRAMGLHQAIALCMDHCYSAELAVNNDWYKTVVLSGGTACLPGLAERLEKELHSALPPYISNGIRVIPPPFGVDTAWFGGTIIGSVSYPLSLINVQFFYAAEDANFNINHQLSTFPGPWCTTKKQFRQKSKLNRIW 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00953 509 SUPERFAMILY F-box domain 25 102 IPR036047 GO:0005515
Vimu11g00953 509 Gene3D - 231 456 - -
Vimu11g00953 509 Gene3D - 128 219 - -
Vimu11g00953 509 Pfam Actin 227 459 IPR004000 -
Vimu11g00953 509 SUPERFAMILY Actin-like ATPase domain 241 460 IPR043129 -
Vimu11g00953 509 SUPERFAMILY Actin-like ATPase domain 129 200 IPR043129 -
Vimu11g00953 509 Gene3D Actin; Chain A, domain 4 282 384 - -
Vimu11g00953 509 Pfam F-box domain 40 80 IPR001810 GO:0005515
Vimu11g00953 509 Gene3D - 37 82 - -
Vimu11g00953 509 ProSiteProfiles F-box domain profile. 36 82 IPR001810 GO:0005515
Vimu11g00953 509 MobiDBLite consensus disorder prediction 13 35 - -
Vimu11g00953 509 SMART fbox_2 42 82 IPR001810 GO:0005515
Vimu11g00953 509 SMART actin_3 128 499 IPR004000 -
Vimu11g00953 509 PANTHER ACTIN 228 498 IPR004000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00953 Vimu-Chr11 9894076 9902977 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00953 177 460 Miscellaneous Gene Families AT2G42100 30.822 2.62e-30 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00953 K16616 - gmx:100804254 751.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g00953 11 9894076 9902977 Vimu11g00953 11 9894076 9902977 ECH