Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00868 ATGTTGGGAAGCGGGGGGGTTTCGGACGGGTACGAGGTTGGCTCAAAGAGACAAAGAATGATGGAATCAAATCCATACTTCGCAGTGAGCAGCGGGACAGGCAACTTACCTTATGGATATGCAGGTGGCTTTCAGCCCCCTCCCTTTCCTGTGGTTCGTCTCAGGGGGCTTCCATTCAACTGTACCGACATTGACATCTTGAAGTTTTTTGCTGGACTGACGATTGTCGATGTGTTGCTGGTCAACAAGAGTGGACGGTTCTCAGGAGAGGCCTTCGTGGTATTTGCGGGAGCAATGCAGGTTGAGTTTGCTTTACAGAGAGATCGCCAGAACATGGGTCGCCGGTATGTAGAAGTGTTCAGGTGTAAGAAACAGGATTATTATAATGCTGTTGCTGCTGAGATCAATTACGAAGGAATATATGATAACGATTACCATGGTAGTAGTCCTCCACCCTCCCGGTCAAAGAGGTTCAGTGATAAAGATCAAATGGAGTACACTGAGATATTGAAGATGCGTGGGCTTCCCTTCCAAGTGACAAAATCTCAAATTGTTGAGTTCTTTAAAGATTACAACCTGATAGAAGACAGGGTACACATTGCATGTCGCCCAGATGGGAAAGCTACTGGAGAGGCATATGTGGAGTTTGTTTCAGCTGAGGAGGCCAAGAGGGCAATGTCCAAGGATAAAATGACCATAGGATCAAGGTATGTGGAGCTGTTCCCTTCTACTCCAGACGAAGCTAGACGGGCAGAGTCAAGATCAAGGCAGTGA 774 0.4729 MLGSGGVSDGYEVGSKRQRMMESNPYFAVSSGTGNLPYGYAGGFQPPPFPVVRLRGLPFNCTDIDILKFFAGLTIVDVLLVNKSGRFSGEAFVVFAGAMQVEFALQRDRQNMGRRYVEVFRCKKQDYYNAVAAEINYEGIYDNDYHGSSPPPSRSKRFSDKDQMEYTEILKMRGLPFQVTKSQIVEFFKDYNLIEDRVHIACRPDGKATGEAYVEFVSAEEAKRAMSKDKMTIGSRYVELFPSTPDEARRAESRSRQ 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00868 257 Gene3D - 151 257 IPR012677 -
Vimu11g00868 257 SUPERFAMILY RNA-binding domain, RBD 167 254 IPR035979 GO:0003676
Vimu11g00868 257 SMART rrm1_1 51 120 IPR000504 GO:0003723
Vimu11g00868 257 SMART rrm1_1 169 241 IPR000504 GO:0003723
Vimu11g00868 257 Gene3D - 49 133 IPR012677 -
Vimu11g00868 257 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN-RELATED 45 249 - -
Vimu11g00868 257 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 53 115 IPR000504 GO:0003723
Vimu11g00868 257 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 172 238 IPR000504 GO:0003723
Vimu11g00868 257 SUPERFAMILY RNA-binding domain, RBD 42 129 IPR035979 GO:0003676
Vimu11g00868 257 CDD RRM_hnRNPH_ESRPs_RBM12_like 169 241 - -
Vimu11g00868 257 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 168 245 IPR000504 GO:0003723
Vimu11g00868 257 CDD RRM_hnRNPH_ESRPs_RBM12_like 51 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00868 Vimu-Chr11 8927022 8927795 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00868 K12898 - gmx:100816391 509.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g00868 11 8927022 8927795 Vimu11g00868 11 8927022 8927795 ECH