Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00768 ATGCAAGACATGTGGAATGTTCCTCCGGGTTTCAGACCCTCCAAATCTGCACCTTCTTCTCCTGCGAAGCCTCTCGGAGCAGTTCTCAGAACGCGCTCTGAGTCCTTCCATGTCACTCACAAGGTTCCAGTTGGTGACACTCCTTATGTCAGAGCAAAAAATGTTCAGTTAGTGGATAAGGATCCGGAGAAAGCAATTCCACTGTTTTGGGCAGCCATTAATGCGGGAGATAGAGTGGACAGTGCTTTGAAAGATATGGCTATTGTCATGAAACAGCAAAATAGGGCTGGAGAAGCCATTGAAGCCATTAAATCCCTTCGAAGTAGATGTTCTGATCAAGCCCAAGAATCTCTTGATAATATCCTCTTGGATCTTTACAAGCAATACTCAGCAAAAAGAAAATTCACTTTGTCTGAACAGAGGTGTGGAAGACTTGATGATCAAATAGCCCTCTTGAAGCACAAGTTGTACTTAATTCAACAAGGGTTGGCATTCAATGGTAAGCGAACAAAGACTGCAAGATCTCAAGGGAAAAAGTTTCAAGTTTCTGTTGAGCAAGAAGCCACGAGATTGCTGGGAAACTTGGGATGGGCACTGATGCAGCAGAACAACTACATAGAAGCAGAAGAGGCTTATCGCCGGGCGCTATCTATTGCTCCTGACAACAATAAGATGTGCAATCTGGGCATTTGCTTGATGAAGCAAGGAAGAATTGGTGAAGCAAAAGAGACACTGTACCGTGTAAAGCCTGCAGTTATGGATGGCCCTAGAGGCTCGGATTCTCACTTGAAAGCCTATGAAAGGGCACAACAGATGCTGAAAGACCTTGAATCTGAGATGATGAATAAGGGAGTTGATAGGATTGAACAAAGCAGGCTCTTTGAGGCCTTTTTAGGTTCTTCATCAATATGGCAACCCCAGCCTTGCAAGGACCACCACACAACCTTGCCAGCAGCTACAAATTCATCCAGAATTCAAGATGATTTTGCTGATGAGAACATCAATTCCAACATAATGACCAAAAATCACACAGCACTGCCACCACCAAAAGCTACCACTATTACTACTACTACCAACAAACAAACTGTTACCATGTTGGGGAACTCACTCAATGTTGCAGCTCCTCCCTTTTATGCATCAAAATCCATGCTGAGAGAACCGTTTGAGAACCAGTTCTCCGAGACCCTTAAGAGAACAAGGTCTGGAAACTCTGCAGGGTCCATGAGAGCGGTTAGTGATTTGAGGGACAGGGACAGCAGCAACAAGTTGCAAGTGGAATTAGAGGTGTCAGTGCCAGAGAACAAAACAAGAAGGCTGTCATCAGAGGATAGTCAGAAGAACAAGTTAACAGATATGTTACCTGATGATGATGACTTTGAAGAGGCGATTCTTGCTGCAATTTTGGGACCCTCCAATGATAATAAAGCTACTGAAACAAGCAAAACTTTGCAGAGGAATAATGACAAGAGGCTTAAGGTTTTTAAGGATATTACGCTATCTCTGAGTCCAAGAGCCTGA 1518 0.4387 MQDMWNVPPGFRPSKSAPSSPAKPLGAVLRTRSESFHVTHKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAGEAIEAIKSLRSRCSDQAQESLDNILLDLYKQYSAKRKFTLSEQRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEEAYRRALSIAPDNNKMCNLGICLMKQGRIGEAKETLYRVKPAVMDGPRGSDSHLKAYERAQQMLKDLESEMMNKGVDRIEQSRLFEAFLGSSSIWQPQPCKDHHTTLPAATNSSRIQDDFADENINSNIMTKNHTALPPPKATTITTTTNKQTVTMLGNSLNVAAPPFYASKSMLREPFENQFSETLKRTRSGNSAGSMRAVSDLRDRDSSNKLQVELEVSVPENKTRRLSSEDSQKNKLTDMLPDDDDFEEAILAAILGPSNDNKATETSKTLQRNNDKRLKVFKDITLSLSPRA 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00768 505 MobiDBLite consensus disorder prediction 395 453 - -
Vimu11g00768 505 Coils Coil 259 286 - -
Vimu11g00768 505 SUPERFAMILY TPR-like 57 296 IPR011990 GO:0005515
Vimu11g00768 505 PANTHER PROTEIN POLLENLESS 3-LIKE 2 13 499 IPR044961 -
Vimu11g00768 505 SMART tpr_5 189 222 IPR019734 GO:0005515
Vimu11g00768 505 ProSiteProfiles TPR repeat region circular profile. 189 222 - -
Vimu11g00768 505 MobiDBLite consensus disorder prediction 431 453 - -
Vimu11g00768 505 MobiDBLite consensus disorder prediction 1 25 - -
Vimu11g00768 505 Gene3D Tetratricopeptide repeat domain 55 250 IPR011990 GO:0005515
Vimu11g00768 505 ProSiteProfiles TPR repeat profile. 189 222 IPR019734 GO:0005515
Vimu11g00768 505 Pfam Tetratricopeptide repeat 191 222 IPR001440 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00768 Vimu-Chr11 8040009 8041986 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00768 - - gmx:100788369 780.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g00768 11 8040009 8041986 Vimu11g00768 11 8040009 8041986 ECH