Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00766 ATGGCCAGGTACGATCGAGCAATCACCGTGTTCTCCCCCGACGGTCACCTCTTCCAGGTCGAGTATGCCCTCGAAGCCGTCCGCAAAGGTAACGCCGCCGTCGGCGTCCGAGGCACCGACAACGTCGTCCTCGGCGTCGAGAAGAAATCCACCGCCAAACTCCAAGACTCCAGGACTGTGAGGAAGATTGTGAATCTCGATGATCACATTGCGCTTGCCTGCGCGGGGCTGAAGGCCGACGCACGTGTGCTCATAAACCGGGCACGTGTGGAGTGCCAAAGTCACAGGCTCACCGTCGAGGATCCCGTTACTGTTGAGTATATCACCCGTTACATTGCGGGGCTTCAGCAGAAGTACACGCAGAGTGGTGGTGTGCGACCCTTTGGGCTTTCCACCCTCATTGTTGTTGAGAGTGGAGGGAAAAATATAGAAGTTGCTGTGATGACTAAGGAGCATGGTCTGCGTCAACTGGAGGAAGGTGAAATTGATGCCATCGTTGCTGAGATCGAAGCAGAGAAAGCAGCTGCTGAGGCTGCGAAGAAAGCCCCTCCGAAGGAGACATGA 564 0.5585 MARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDNVVLGVEKKSTAKLQDSRTVRKIVNLDDHIALACAGLKADARVLINRARVECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVVESGGKNIEVAVMTKEHGLRQLEEGEIDAIVAEIEAEKAAAEAAKKAPPKET 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00766 187 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 3 172 IPR029055 -
Vimu11g00766 187 PANTHER PROTEASOME SUBUNIT ALPHA/BETA 8 135 - -
Vimu11g00766 187 Coils Coil 162 182 - -
Vimu11g00766 187 ProSitePatterns Proteasome alpha-type subunits signature. 4 26 IPR000426 GO:0006511|GO:0019773
Vimu11g00766 187 Pfam Proteasome subunit A N-terminal signature 4 26 IPR000426 GO:0006511|GO:0019773
Vimu11g00766 187 ProSiteProfiles Proteasome alpha-type subunit profile. 19 187 IPR023332 -
Vimu11g00766 187 Pfam Proteasome subunit 27 135 IPR001353 GO:0005839|GO:0051603
Vimu11g00766 187 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 139 184 IPR029055 -
Vimu11g00766 187 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 1 138 IPR029055 -
Vimu11g00766 187 SMART Proteasome_A_N_2 4 26 IPR000426 GO:0006511|GO:0019773
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00766 Vimu-Chr11 8031717 8034495 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00766 K02731 - gmx:100790481 263.848
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g00766 11 8031717 8034495 Vimu11g00766 11 8031717 8034495 ECH