Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vimu11g00734 | ATGCTTGGCTTCCTTTCCCCTCTGGCTGCTTTCTGGGGCTGGGTTTGTATGCATGGAACAATAGGTTGCACTAACAACAATTATGCATCAAGAGAGAAGTGCAAGAAGTGTGGACAACCAAAGGAAGTAGCAGCCATGCCAGCAATTGCGATGACTGGAGCATCTTTCCCCACTTATTCACATTACTATTCCAGGGGCCCAGGGGGACCAGAACAAAAGATGAATATCGGATTGCTTGGCAGTGGAGCACCGCCACAGTCACTACATTTAAACTCCAATTGGCCCATTCTTGGAGCAGATAAGTATGGTATCCAGCCGATTTCCATATGGCTACCTGGTGGAAATTATAGCTCTGGACATCCTCTTGATAATTCCACCAACCAGAACCTAACTGTTCCAAAGGGATGGCGCAGTGGGGACTGGATCTGTAACTGTGGCTTCCATAATTACTCGTCCCGCTCCCAGTGTAAAAAATGCAATGCCTTTCAACCTGCACTTGGGACAAAGCGACTAGCCTCTGAAGAGTTGGTTTATGACTGGGACAACAAGAGATTGAATGTAGGAACTACAAATGATCAACAGCAAAAATATACAAGTTTAGATCAAGTGGTAGGGACAGGTGCAGATCCAAAACCTGGAGTCTTCCCCTCTTATCCCAGCATGAACTCAAGTACAACTCCAAGTTTGCCATTGGCCACCCTTCTTCCACCTCAAGTTTCTACACCTGCCCTCCTTGGAAAAGGAGCAAAGCAATGGCGCAGTGGAGACTGGATGTGCTCAAATTGCAATAATCATAATTATGCTTCAAGACTACAGTGTAACAGGTGCAAAACTCAAAGAATGGCCCCCATGCAACCTGTTAATGTTGTGTAA | 873 | 0.4593 | MLGFLSPLAAFWGWVCMHGTIGCTNNNYASREKCKKCGQPKEVAAMPAIAMTGASFPTYSHYYSRGPGGPEQKMNIGLLGSGAPPQSLHLNSNWPILGADKYGIQPISIWLPGGNYSSGHPLDNSTNQNLTVPKGWRSGDWICNCGFHNYSSRSQCKKCNAFQPALGTKRLASEELVYDWDNKRLNVGTTNDQQQKYTSLDQVVGTGADPKPGVFPSYPSMNSSTTPSLPLATLLPPQVSTPALLGKGAKQWRSGDWMCSNCNNHNYASRLQCNRCKTQRMAPMQPVNVV | 290 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vimu11g00734 | 290 | Gene3D | - | 131 | 165 | - | - | |
| Vimu11g00734 | 290 | Gene3D | - | 13 | 43 | - | - | |
| Vimu11g00734 | 290 | Gene3D | - | 248 | 283 | - | - | |
| Vimu11g00734 | 290 | SUPERFAMILY | Ran binding protein zinc finger-like | 134 | 164 | IPR036443 | - | |
| Vimu11g00734 | 290 | ProSiteProfiles | Zinc finger RanBP2 type profile. | 253 | 282 | IPR001876 | - | |
| Vimu11g00734 | 290 | ProSitePatterns | Zinc finger RanBP2-type signature. | 257 | 276 | IPR001876 | - | |
| Vimu11g00734 | 290 | Pfam | Zn-finger in Ran binding protein and others | 253 | 280 | IPR001876 | - | |
| Vimu11g00734 | 290 | ProSiteProfiles | Zinc finger RanBP2 type profile. | 137 | 165 | IPR001876 | - | |
| Vimu11g00734 | 290 | PANTHER | ZINC FINGER PROTEIN | 116 | 281 | - | - | |
| Vimu11g00734 | 290 | ProSiteProfiles | Zinc finger RanBP2 type profile. | 14 | 43 | IPR001876 | - | |
| Vimu11g00734 | 290 | SMART | zf_4 | 139 | 162 | IPR001876 | - | |
| Vimu11g00734 | 290 | SMART | zf_4 | 255 | 279 | IPR001876 | - | |
| Vimu11g00734 | 290 | SMART | zf_4 | 12 | 40 | IPR001876 | - | |
| Vimu11g00734 | 290 | SUPERFAMILY | Ran binding protein zinc finger-like | 247 | 282 | IPR036443 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vimu11g00734 | Vimu-Chr11 | 7782722 | 7784367 | Transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vimu11g00734 | - | - | gmx:100784874 | 531.176 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Vimu11g00734 | 11 | 7782722 | 7784367 | Vimu11g00734 | 11 | 7782722 | 7784367 | ECH |