Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00682 ATGGAGCACTTGGAGATGGTGAATGAAGTGAAACACCAAAGAATCAAAGCCAACGGGATATGGTTACATGTGGCAGAGAAAGGAACAGGCCCACTTGTTCTTCTGCTTCATGGCTTCCCAGAACTATGGTATGCCTGGCGCCACCAGATCAATTACTTGGCCCAACATGGCTACCATGCAGTTGCACCTGATCTAAGAGGCTATGGTGACTCTGATTCTCCTATTGAACCTACTTCCTACACTTGTCACCACCTTGTAGGTGACCTTATAGCTTTGCTTGACCATTTTGGTGAACAACAGGCATTTGTTGTTGGATCTGATTGGGGATCAACAATTGGATGGCATCTGAGTCTGTTTAGACCTGACAGAGTAAAAGGATTTGTTGCTTTGGGTGTTCCTTACCACCCAAGATCACCCACCAGTAAAACGGTTGAAACTATCAGAAAATTATTTGGAGATCAGAGTCATGTCTGCCAGTTCCAGGAACCAGGCAGAGCAGAGAGAGCTTTTGCTAGATATGATTATCTGACAGTGATGAAGAAGTTTATTCTGATGATAAATACAGATTTTCTAGCATCTCCAGAAGGCATGGAGCTAATTGATTTCCTGCCAACACCTTCTGTTGTGCCATCATGGATAACTGAGGAAGAACTCACAGTTTTTGCAGACAAATTCCAAGAGTCTGGTTTTACTGGTCCACTCAATTATTACCGTGCAATGGACTTAAATTGGGAGCTTCTTGCACCATGGCAAGGATCAAAGATAACAGTTCCAACGAAGTTCATAGCAGGAAACAAAGACATGGCTTTTGATCTTGAAACATTTGGTACAAAGGCTTTTGTGGAAAGTGGTATTTTCAAGAGTCTTGTTCCCAACCTTGAAGTTGTTATTATAGACGGCCACCATTTTATACATCAAGAAAAAGCCCAACAAATTTCGGACGAAATCCTTTCCTTCATCCGTAAATTTCCCCCCAATGCTTCAATATAA 990 0.4222 MEHLEMVNEVKHQRIKANGIWLHVAEKGTGPLVLLLHGFPELWYAWRHQINYLAQHGYHAVAPDLRGYGDSDSPIEPTSYTCHHLVGDLIALLDHFGEQQAFVVGSDWGSTIGWHLSLFRPDRVKGFVALGVPYHPRSPTSKTVETIRKLFGDQSHVCQFQEPGRAERAFARYDYLTVMKKFILMINTDFLASPEGMELIDFLPTPSVVPSWITEEELTVFADKFQESGFTGPLNYYRAMDLNWELLAPWQGSKITVPTKFIAGNKDMAFDLETFGTKAFVESGIFKSLVPNLEVVIIDGHHFIHQEKAQQISDEILSFIRKFPPNASI 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00682 329 Gene3D alpha/beta hydrolase 7 324 IPR029058 -
Vimu11g00682 329 FunFam Epoxide hydrolase 8 323 - -
Vimu11g00682 329 PRINTS Alpha/beta hydrolase fold signature 103 116 IPR000073 -
Vimu11g00682 329 PRINTS Alpha/beta hydrolase fold signature 117 130 IPR000073 -
Vimu11g00682 329 PRINTS Alpha/beta hydrolase fold signature 57 72 IPR000073 -
Vimu11g00682 329 SUPERFAMILY alpha/beta-Hydrolases 6 322 IPR029058 -
Vimu11g00682 329 PRINTS Epoxide hydrolase signature 37 55 IPR000639 GO:0003824
Vimu11g00682 329 PRINTS Epoxide hydrolase signature 103 116 IPR000639 GO:0003824
Vimu11g00682 329 PRINTS Epoxide hydrolase signature 57 72 IPR000639 GO:0003824
Vimu11g00682 329 PRINTS Epoxide hydrolase signature 257 273 IPR000639 GO:0003824
Vimu11g00682 329 PRINTS Epoxide hydrolase signature 117 130 IPR000639 GO:0003824
Vimu11g00682 329 PRINTS Epoxide hydrolase signature 297 319 IPR000639 GO:0003824
Vimu11g00682 329 PANTHER EPOXIDE HYDROLASE 12 321 - -
Vimu11g00682 329 Pfam alpha/beta hydrolase fold 31 151 IPR000073 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00682 Vimu-Chr11 7247226 7248884 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00682 6 323 Acyl Lipid Metabolism Gene Families AT3G51000 62.617 3.93e-150 423
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00682 - - pvu:PHAVU_003G257900g 637.876
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g00682 11 7247226 7248884 Vimu11g00682 11 7247226 7248884 ECH