Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00677 ATGGATCAGGAAGAAGGAGCCATCACCGAAATGAAACCGGGCCGGCCCAACCGAGCCCAAACTCGAGGGTGGGGTTATTCGATCACTTTCCATTTCAGTGTGAACGGAGGGGGCAAATTCGGTTTAGGAGGAAGACAGAGACCCTGTCACCACTCTCATCTCATCACACTCACTTACACCGTTACACTCCAACAGCGTCTTCCATTCCCTCATCCAATTCAATGCAATCAACCATTAACAATGAGGTTCTATTCCCGCTTCAAACACTTATCCCATCTCCTTCAAACCCTAACTCCACATCAAAACCCTCCCTTCACTTCCGCCCGGATCTCGATCTTACCCAACGCGCAACCCCTGCCACGACCCTCCTACGCGCGTGGCTACTGCGTCGCGTCGCAGTCGCACACTTCGGAGAAGGTATCGGCGATCGTAGACGAAGTGATGGGACTGACATTACTGGAAGTGATGGACCTGGTGGAGGTGATGCGCGAAAAGCGCGGTGTCAACGAGCTTCCGATCATGATGCTGATGATGCCGGGAATGGAGGTGCGGGGCTTGCCGAGGGGTGCGCCCAAGGGTGGCGGTGGCGGAGAGGGTGGAGAGGTGAAGGTGGCGGAGAAGACGGCGTTTGATTTGAAGCTTGAGGGTTTCGATGCGGCGGGGAAGATCAAGGTGATTAAGGAGGTGAGGACCTTCACGAGTTTGGGGTTGAAGGAAGCTAAGGATTTGGTGGAGAAGGTGCCTGCGGTGTTGAAGACAGGAGTCACGAAAGAAGAGGCTGAGAGTATCATTGCCAAGATGAAGGCGGTTGGCGCAAAGTTTTGGAAGTTTCAACAGCTATATTGCCACCATAATTCAGGCCTCATAAGCCGCTTTTGCAGTGACTTTGGTCATTTTCCCGGCGTAGGTTGTGAGTTAGTTGTTATAGTAGAGATTGCTGGGTCTCTCGTGTTGCTAATGCAGTTTAAAATCTTTTTGCCCACCAATTTGTTAGTTGTGTTTCGTGAAATTTTGTTCTGGGGCTGGTGGCTGACGACGGGTGTTGAAAACGAGAAGCTACAGGAAATAGCTTTTACTTGGATTTGGGAATTTGGCGAAAAGACAAGACGACGTACAAAACATGGGGTAGAGTATTTTTTGCTTCGGTCAGGTGTCGCAGCTTATTCCTCACATTCAAGTTCTCGGCAGCTCTTATCTCAATTGGTGGTTGAAAGACGCCTTCTGGCTCCCAAGAGTGGTGGTGAGGTTGGATTCTAG 1257 0.5084 MDQEEGAITEMKPGRPNRAQTRGWGYSITFHFSVNGGGKFGLGGRQRPCHHSHLITLTYTVTLQQRLPFPHPIQCNQPLTMRFYSRFKHLSHLLQTLTPHQNPPFTSARISILPNAQPLPRPSYARGYCVASQSHTSEKVSAIVDEVMGLTLLEVMDLVEVMREKRGVNELPIMMLMMPGMEVRGLPRGAPKGGGGGEGGEVKVAEKTAFDLKLEGFDAAGKIKVIKEVRTFTSLGLKEAKDLVEKVPAVLKTGVTKEEAESIIAKMKAVGAKFWKFQQLYCHHNSGLISRFCSDFGHFPGVGCELVVIVEIAGSLVLLMQFKIFLPTNLLVVFREILFWGWWLTTGVENEKLQEIAFTWIWEFGEKTRRRTKHGVEYFLLRSGVAAYSSHSSSRQLLSQLVVERRLLAPKSGGEVGF 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00677 418 Pfam Ribosomal protein L7/L12 C-terminal domain 210 273 IPR013823 GO:0003735|GO:0006412
Vimu11g00677 418 CDD Ribosomal_L7_L12 138 273 IPR000206 GO:0003735|GO:0005840|GO:0006412
Vimu11g00677 418 Hamap 50S ribosomal protein L7/L12 [rplL]. 137 277 IPR000206 GO:0003735|GO:0005840|GO:0006412
Vimu11g00677 418 MobiDBLite consensus disorder prediction 1 20 - -
Vimu11g00677 418 FunFam 50S ribosomal protein L7/L12 206 275 - -
Vimu11g00677 418 SUPERFAMILY ClpS-like 206 273 IPR014719 -
Vimu11g00677 418 PANTHER 39S RIBOSOMAL PROTEIN L12 120 273 IPR000206 GO:0003735|GO:0005840|GO:0006412
Vimu11g00677 418 Gene3D - 204 274 IPR014719 -
Vimu11g00677 418 Pfam Ribosomal protein L7/L12 dimerisation domain 139 178 IPR008932 GO:0003735|GO:0005840|GO:0006412
Vimu11g00677 418 SUPERFAMILY Ribosomal protein L7/12, oligomerisation (N-terminal) domain 139 183 IPR036235 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00677 Vimu-Chr11 7215559 7220486 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00677 K02935 - gmx:100775592 251.136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g00677 11 7215559 7220486 Vimu11g00677 11 7215559 7220486 ECH