Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00656 ATGGAGAAGCTGGCTTCTTCAACTGCAACTGTTCCCACGCAACACTTCCTCTTTCAACTTCAACACTCTCTCTTTCCCGTTTGCGCCTTCGCTACCTTTCACCGGAACTGCACCGAATCCCTCTCCCACCTCTCTTCCAGAACCAGACACCGTCGCTTCCAACCATTCCACGCCAAACAAGACCAGCTCTGGGTCGGCGAAGAAGAATTGCAACTACAATTGAAGGAAGCAGTAGAAGAAGAAGAAGAAGAAGATTCGTATTTTGACGATGATGACTCGTCTTTCTTGTCCCTCAGCGACAAGCCCGACCGGAACATGGCCTTGCTCGACGATTACGAGACCGAGGAGCTCGATTTCGATACCGGATATGTGGCGTTACTTGGGAAGCCAAATGTTGGAAAGAGTACACTGGCGAACCAAATGCTTGGCCAAAAGTTGTCAATAGTTACTGATAAACCTCAAACAACCCGGCATCGAATTCTGTGTATATGTTCTGGCACGGATTACCAGATGATACTTTATGACACACCCGGTGTTCTACAGAAGGAAATGCACATGTTAGACTCAATGATGATGAAAAATGTTCGCAGTGCAGCAGTTAATGCTGACTGTGTGTTGGTTCTTGTGGACGCACGTAAAGCTCCCGAAAAAATTGATGGATTGTTGGAAGAAGGAGTAGGAGACCTCAAAGATAAACCACCCACTCTATTGATTATAAACAAGAAGGACCTTGTTAAACCTGGGGAACTTGCAAAGAAACTTGAGTGGTATGAGAAATTTACTGATGTTGATGAGGTTATACCTGTTAGTGCCAAATATGGTCAGGGGGTTGAAGATGTAAAGGACTGGATACTGTCAAAGATTCCCAATGGACCAGCTTATTATCCAAAGGCATGTCAAAACAATCCCATTGTGATAATCTTGTCAATATGCCATACCACCTATAGGAATAGAGTGGCATGCAGTTATAGACTGGATATAGTCAGTGAGCATCCAGAAAGATTTTTTGTGGCTGAAATTGTTAGAGAAAAGATTTTTATACAGTATCGAAATGAAATTCCATATGCATGTCAGGTAAATGTTGTAAACTATAAAGCTCGGCCAAATGCAAAAGATTACATACAAGTAGAGATTTTGGTTGAGAAAAACTCACAGAAGATTATCATTATTGGAAAAGAAGGAAAGGCTTTGAAACTGCTTGCAATGGCTGCTCGCCTTGATGTTGAAGATTTTTTACAGAAGAAAGTTTATCTTGAGATTGAAGTAAAGGTTAGAGAAAATTGGCGACAAGATGAAGGGCTTCTAAAGCACTATGGTTATGGAGGTCAGATACGTGTTATATAA 1344 0.4196 MEKLASSTATVPTQHFLFQLQHSLFPVCAFATFHRNCTESLSHLSSRTRHRRFQPFHAKQDQLWVGEEELQLQLKEAVEEEEEEDSYFDDDDSSFLSLSDKPDRNMALLDDYETEELDFDTGYVALLGKPNVGKSTLANQMLGQKLSIVTDKPQTTRHRILCICSGTDYQMILYDTPGVLQKEMHMLDSMMMKNVRSAAVNADCVLVLVDARKAPEKIDGLLEEGVGDLKDKPPTLLIINKKDLVKPGELAKKLEWYEKFTDVDEVIPVSAKYGQGVEDVKDWILSKIPNGPAYYPKACQNNPIVIILSICHTTYRNRVACSYRLDIVSEHPERFFVAEIVREKIFIQYRNEIPYACQVNVVNYKARPNAKDYIQVEILVEKNSQKIIIIGKEGKALKLLAMAARLDVEDFLQKKVYLEIEVKVRENWRQDEGLLKHYGYGGQIRVI 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00656 447 Hamap GTPase Era [era]. 119 440 IPR005662 GO:0003723|GO:0005525
Vimu11g00656 447 FunFam GTPase Era 329 443 - -
Vimu11g00656 447 NCBIfam GTPase Era 122 298 IPR005662 GO:0003723|GO:0005525
Vimu11g00656 447 Gene3D - 329 444 IPR015946 -
Vimu11g00656 447 Gene3D - 118 300 IPR027417 -
Vimu11g00656 447 SUPERFAMILY Prokaryotic type KH domain (KH-domain type II) 326 440 IPR009019 GO:0003723
Vimu11g00656 447 FunFam GTPase Era 117 299 - -
Vimu11g00656 447 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 124 349 IPR027417 -
Vimu11g00656 447 Pfam KH domain 352 429 IPR004044 GO:0003723
Vimu11g00656 447 ProSiteProfiles Type-2 KH domain profile. 349 426 IPR004044 GO:0003723
Vimu11g00656 447 PANTHER GTPASE ERA 79 432 IPR005662 GO:0003723|GO:0005525
Vimu11g00656 447 CDD KH-II_Era 338 424 - -
Vimu11g00656 447 NCBIfam small GTP-binding protein domain 123 283 IPR005225 GO:0005525
Vimu11g00656 447 ProSiteProfiles Era-type guanine nucleotide-binding (G) domain profile. 120 290 IPR030388 GO:0005525
Vimu11g00656 447 Pfam 50S ribosome-binding GTPase 124 241 IPR006073 GO:0005525
Vimu11g00656 447 CDD Era 122 287 IPR030388 GO:0005525
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00656 K03595 - gmx:100815820 649.818
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g00656 11 7010366 7014687 Vimu11g00656 11 7010366 7014687 ECH