Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00625 ATGATCAAAGCAGTGCTGGTGATGAACACGCAGGGGAAGCCTCGTCTCGCCAAATTCTACGAATTTCAGCCCGTGGAGCAGCAGCAGGAAGCCATTCGCAATGTGTTTTCAGTATTATGCAGTAGACCTGAACATGTCAGCAATTTTGTGGATGCCGAGTCCTTCTTTGGCCCGGACTCTCGCCTTGTCTACAAGCACTTTGCAACTTTATATTTCGTGTTCATTTTTGATAGTTCTGAAAACGAACTTGCTATGCTTGATTTGATACAAGTCTTTGTTGAAACATTGGACAAATGCTTCAGAAATGTATGTGAGCTTGATATCGTGTTCAACTATAGTAAGTTGCATACTATACTAGATGAGATCATTCTCGGAGGCCAGGTGTTGGAGACAAGTTCAACTGAGGTGATGAAAGCTATTGAAGAAATAGCAAGGTGCTTTCTCTTTCCCTTCTGGTTTTTTACGTGGTCTTTCTTCTTTACATAG 486 0.4198 MIKAVLVMNTQGKPRLAKFYEFQPVEQQQEAIRNVFSVLCSRPEHVSNFVDAESFFGPDSRLVYKHFATLYFVFIFDSSENELAMLDLIQVFVETLDKCFRNVCELDIVFNYSKLHTILDEIILGGQVLETSSTEVMKAIEEIARCFLFPFWFFTWSFFFT 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00625 161 SUPERFAMILY SNARE-like 1 141 IPR011012 -
Vimu11g00625 161 Pfam Clathrin adaptor complex small chain 1 143 IPR022775 -
Vimu11g00625 161 ProSitePatterns Clathrin adaptor complexes small chain signature. 62 72 IPR000804 GO:0006886|GO:0016192|GO:0030117
Vimu11g00625 161 PANTHER ADAPTOR COMPLEXES SMALL SUBUNIT FAMILY 2 144 IPR016635 GO:0015031
Vimu11g00625 161 FunFam AP complex subunit sigma 1 147 - -
Vimu11g00625 161 PIRSF AP_complex_sigma 1 147 IPR016635 GO:0015031
Vimu11g00625 161 Gene3D - 1 147 - -
Vimu11g00625 161 CDD AP3_sigma 1 145 IPR027155 GO:0006896|GO:0030123
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00625 Vimu-Chr11 6734917 6738214 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00625 K12399 - gmx:100306517 272.707
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g00625 11 6734917 6738214 Vimu11g00625 11 6734917 6738214 ECH