Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00622 ATGCGCCCATGCCCACTTCCTAATTCTCTTCTCAAAAACTTCTTCAATCATATAGCATTACCCTTTCAGCTCCTTCCACACCTTCATTCTCACAAGTGTGTAAAACGGATCGGTTTGAGAAGAGAGAAAAATCAAATTGAGGTTGAAAAGGTTGACCTTCTTCGTGTTGGACTAGGTGAACGGAACGGAATTGGTGTCTTTTTTCGGGGCTCCGGGAAAGTGTATAAAGAATTGTTAGGTGTTTGGTTAGTTGGGATTGAATACAGTGGTTTTGATTTGCTTGTTATTGAGGGGAGTTCTTCTTTACGACGGTTTGATTGCTTGAAGAGGAAGCGTAATCCTGAAGTTTTCTGCTGCAGGTGGAAGCTGGTGGACAACATGTTCCTTCTTAGAAGGCAAGGCCAAAATCAGCTGGAGAATGATTCCTCAAAACAAGATACAAAGGTGAATGAACTCAGGGCTGCTGTTGGACCCCTCTCTGGTCGTCGACTACTGTATTGCACAGATGCATGTCTAAGGAGATATTTAGAAGCAAGGAATTGGAATGTTGATAAAGCAAAGAAAATGCTGGAGGAAACACTCAAGTGGAGGGCAACTTATAAGCCAGAAGAAATCCGTTGGGCTGAAGTAGCACATGAGGGTGAGACAGGTAAAGTATCCAGAGCTAACTTTCATGATCGACTTGGGAGGACTGTGCTTATTATGAGGCCAGGAATGCAGAACACAACATCAGCTGAAGATAATATCAGGCATTTAGTCTATCTATTGGAAAATGCTATACTAAATCTTCAGGAAGGTCAAGAACAAATGTCGTGGTTGATAGACTTCACAGGATTATCAATGAATACAAGTATTTCTGTTAAAACAGCTCGTGATATTATTCACATTTTACAAAATCACTATCCAGAAAGGCTTGCTATTGCTTTCCTGTACAATCCACCAAGAATATTTCAGGCTTTCTGGAAGGCCGTGAGGTTTTTCCTGGATCCGAAGACAGTCCAGAAGGTAAAGTTTGTTTATCCTAATAATAAGGACAGTGTGGAACTAATGCAATCACTCTTCGACCTAGATAACCTTCCAAGTGAATTTGGAGGGAAAACAAGTTTAATGTATGACCATGAAGAGTTCTCACGGTTGATGACTGAGGATGATGTGAAAACTGCTAAGTTCTGGGGACTTGACCAGAAGCCTTTCAACCCTCCTAAGAAAGGGCATGCTGGAGCAGAGGTGGCACCAGAACCTGTGTCTGTTGAGACAGTAGGTAGTTAG 1269 0.42 MRPCPLPNSLLKNFFNHIALPFQLLPHLHSHKCVKRIGLRREKNQIEVEKVDLLRVGLGERNGIGVFFRGSGKVYKELLGVWLVGIEYSGFDLLVIEGSSSLRRFDCLKRKRNPEVFCCRWKLVDNMFLLRRQGQNQLENDSSKQDTKVNELRAAVGPLSGRRLLYCTDACLRRYLEARNWNVDKAKKMLEETLKWRATYKPEEIRWAEVAHEGETGKVSRANFHDRLGRTVLIMRPGMQNTTSAEDNIRHLVYLLENAILNLQEGQEQMSWLIDFTGLSMNTSISVKTARDIIHILQNHYPERLAIAFLYNPPRIFQAFWKAVRFFLDPKTVQKVKFVYPNNKDSVELMQSLFDLDNLPSEFGGKTSLMYDHEEFSRLMTEDDVKTAKFWGLDQKPFNPPKKGHAGAEVAPEPVSVETVGS 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00622 422 Gene3D - 127 394 IPR036865 -
Vimu11g00622 422 Pfam CRAL/TRIO, N-terminal domain 167 192 IPR011074 -
Vimu11g00622 422 SMART sec14_4 213 368 IPR001251 -
Vimu11g00622 422 MobiDBLite consensus disorder prediction 398 422 - -
Vimu11g00622 422 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 207 371 IPR001251 -
Vimu11g00622 422 Pfam CRAL/TRIO domain 224 365 IPR001251 -
Vimu11g00622 422 PANTHER GH16843P 135 396 - -
Vimu11g00622 422 CDD SEC14 225 366 IPR001251 -
Vimu11g00622 422 SUPERFAMILY CRAL/TRIO N-terminal domain 135 208 IPR036273 -
Vimu11g00622 422 SMART CRAL_TRIO_N_2 168 193 IPR011074 -
Vimu11g00622 422 FunFam Phosphatidylinositol transfer protein 3 129 399 - -
Vimu11g00622 422 SUPERFAMILY CRAL/TRIO domain 208 383 IPR036865 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00622 Vimu-Chr11 6716806 6720573 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00622 172 360 Acyl Lipid Metabolism Gene Families AT1G55840 27.053 2.46e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00622 K26544 - gmx:100800024 551.206
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g00622 11 6716806 6720573 Vimu11g00622 11 6716806 6720573 ECH