Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00590 ATGGCTACCGATACAATTTTCAACCCTTCTAAGTGGTTCTCCAACAAAACTCTTAGGTTAAGCCTTCGTCGCCCAAGATCAAGATCAAGATCCTCCAACTCACCATCACAATCCTCAACTGCTTCTCCACCATCATCTCCCATGTCAACATGCACAACCCCAAAGAAGGAAGACATGAACGGCCTGGTCGAAGCTTTTCGTCACTTCGATGGTGATGGAGATGGCAAAATCTCCGCCTACGAGCTTAGGTCGTATTTTGGGTCCATTGGGGAGCACGTGTCTCACGAGGATGTCGAAGGGGTGATCCATGACCTCGATTCCGATGGGGATAACATGTTGGACTTGCAGGATTTCACGAAGCTGATGAAGAGAGATGGTGGTGATGGTGATGACGGGGATCTGAGAAAGGCTTTTGAGATGTTTGTGTGGGAGAAAGAAGGGTGTGGCTGCATCACCCCGAAGGGGTTGCAGAGGATGTTGCACCGTCTTGGAGATGATAGATCCTATGATGAGTGTGTTGCCATGATTGGTGCCTTTGACATTGATCACAACGGTGTTCTTGATTTCGATGAGTTTTACCAAATGATGGCTTAG 594 0.4798 MATDTIFNPSKWFSNKTLRLSLRRPRSRSRSSNSPSQSSTASPPSSPMSTCTTPKKEDMNGLVEAFRHFDGDGDGKISAYELRSYFGSIGEHVSHEDVEGVIHDLDSDGDNMLDLQDFTKLMKRDGGDGDDGDLRKAFEMFVWEKEGCGCITPKGLQRMLHRLGDDRSYDECVAMIGAFDIDHNGVLDFDEFYQMMA 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00590 197 ProSiteProfiles EF-hand calcium-binding domain profile. 167 197 IPR002048 GO:0005509
Vimu11g00590 197 ProSiteProfiles EF-hand calcium-binding domain profile. 93 128 IPR002048 GO:0005509
Vimu11g00590 197 CDD EFh 134 197 IPR002048 GO:0005509
Vimu11g00590 197 ProSiteProfiles EF-hand calcium-binding domain profile. 57 92 IPR002048 GO:0005509
Vimu11g00590 197 CDD EFh 62 123 IPR002048 GO:0005509
Vimu11g00590 197 Gene3D - 32 126 - -
Vimu11g00590 197 MobiDBLite consensus disorder prediction 18 57 - -
Vimu11g00590 197 PANTHER CALCIUM BINDING PROTEIN 113 196 - -
Vimu11g00590 197 MobiDBLite consensus disorder prediction 27 56 - -
Vimu11g00590 197 SUPERFAMILY EF-hand 44 196 IPR011992 -
Vimu11g00590 197 ProSitePatterns EF-hand calcium-binding domain. 70 82 IPR018247 -
Vimu11g00590 197 ProSitePatterns EF-hand calcium-binding domain. 180 192 IPR018247 -
Vimu11g00590 197 ProSitePatterns EF-hand calcium-binding domain. 106 118 IPR018247 -
Vimu11g00590 197 Gene3D - 127 197 - -
Vimu11g00590 197 Pfam EF-hand domain pair 149 196 IPR002048 GO:0005509
Vimu11g00590 197 Pfam EF-hand domain pair 62 123 IPR002048 GO:0005509
Vimu11g00590 197 SMART efh_1 61 89 IPR002048 GO:0005509
Vimu11g00590 197 SMART efh_1 171 197 IPR002048 GO:0005509
Vimu11g00590 197 SMART efh_1 97 125 IPR002048 GO:0005509
Vimu11g00590 197 FunFam Calmodulin A 43 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00590 Vimu-Chr11 6302548 6303141 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00590 8 197 EF-hand Containing Proteins AT3G50770 51.500 1.70e-59 183
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00590 K13448 - gmx:100306370 262.692
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g00590 11 6302548 6303141 Vimu11g00590 11 6302548 6303141 ECH