Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00280 ATGGCTCCGATGCTTGAGAGTGAAAAAGACCCTCCACAACCACAACCACCTTCACGTGCCTTTCTGGACACAGTTGAAGAAATCACCGCAATTTATAGGTCACTGCCACCTCGACCTTCCATTGAAGAGGTGGAAGCTGCCACGTCCACTGTGGATACCCTCAACAAAGACGAACAAACCAAACTCCACCAAATCTCAATGCAAAAGCCTCCTCACGATGTTCCCGAGGACCTCTTCTCTGTCCTGCAGCAACTCAAGAAGACCATGCTCCTTTTCCATACCCAACAACACAGAAGAGAGGCTCTTCAACTTCTTGAACTCGAAAACATGTTTCAAACATTCGGTCATCTCATTCAAAGGGCTTCTGAATTGGTTTCTGGAGATACCCAGAAGCAAAGTCTTCCCTCTATACCTGAAGAACTCGTGGTGATCACTGACCAAAGTGAAACTTTACTGAAGGAAGACGAAGAATCACAGAAGAATGATTTCCAAATGATACACCGTTCCTTCTCTACAGGGAATGGAAGCACTGAGAAATTAAGTCTAATGAAAGTTGCTACTCTTATTGAAAGTTGTGCTGGTAGTGGAGCTACAACCCTTGAACTTAGAGGGAAGTTGGAGGATCAGATGGAATGGTTGCCGGTGTCAATTGGGAAATTATCTGATGTCACTGAAATGGACCTATCAGAAAACAGAATCATGGCTCTTCCTACAACCATTGTGGGTCTCAAGGCCTTAACAAAGCTCGATCTTCACTCAAACCAACTTATAAACCTTCCCCATTCATTTGGTGAATTGATAAACCTTGTTGATCTTGACATCCACGCCAACAGATTGAAATCACTTCCTGCTACTTTCGGAAACTTGACAAACCTCATTGATCTAGACTTGAGCTCAAATGGGTTCACAAATTTACCAGAGACAATTGGGAATTTGAGCAGCTTGAAGAGATTGAATGCTGAGACCAACGAGCTTGAGGAACTGCCTCACACAATTGGAAATTGCTCATCACTATCTACGCTCAAGTTGGATTTCAATCAGCTCAAGGCCTTGCCTGAGGCAATTGGGAAGCTTGAATGGTTGGAGATTCTCACTTTGCACTATAATAGAGTTAAGAGGTTGCCTTCCACAGTGGGTAATCTACACAATTTGAAGGAACTTGATGTTAGCTTTAATGAGCTGGAATTTGTACCAGAGAACCTGTGTTTTGCAACTAATTTGAAGAAATTAAACTTGGGGAAGAACTTTGCAGACCTAAGAGCCTTGCCAACATCAATTGGAAATCTTGAAATGCTTGAGGAGTTGGATATAAGTGATGATCAAATAAAATCTTTACCAGAGTCTTTCAGGTTCTTGTCCAAGTTGAGAGTTTTCCGAGCTGATGAGACCCCCCTTGAGGTGCCACCCAGAGAATTGGTCAAGTTGGGTGCTCAGGAAGTTGTGCACTATATGGCTGATTTTGTCACCAAAAGGGACGCAAAAATGGTTCCATCAAAGAAGAAAAAGAAGGGATTCTGGTCCTGGTTTTGCTCCATATTTTGCTCTAAGCTTGAATGA 1557 0.429 MAPMLESEKDPPQPQPPSRAFLDTVEEITAIYRSLPPRPSIEEVEAATSTVDTLNKDEQTKLHQISMQKPPHDVPEDLFSVLQQLKKTMLLFHTQQHRREALQLLELENMFQTFGHLIQRASELVSGDTQKQSLPSIPEELVVITDQSETLLKEDEESQKNDFQMIHRSFSTGNGSTEKLSLMKVATLIESCAGSGATTLELRGKLEDQMEWLPVSIGKLSDVTEMDLSENRIMALPTTIVGLKALTKLDLHSNQLINLPHSFGELINLVDLDIHANRLKSLPATFGNLTNLIDLDLSSNGFTNLPETIGNLSSLKRLNAETNELEELPHTIGNCSSLSTLKLDFNQLKALPEAIGKLEWLEILTLHYNRVKRLPSTVGNLHNLKELDVSFNELEFVPENLCFATNLKKLNLGKNFADLRALPTSIGNLEMLEELDISDDQIKSLPESFRFLSKLRVFRADETPLEVPPRELVKLGAQEVVHYMADFVTKRDAKMVPSKKKKKGFWSWFCSIFCSKLE 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00280 518 Gene3D Ribonuclease Inhibitor 195 283 IPR032675 -
Vimu11g00280 518 Gene3D Ribonuclease Inhibitor 372 487 IPR032675 -
Vimu11g00280 518 Gene3D Ribonuclease Inhibitor 284 371 IPR032675 -
Vimu11g00280 518 PANTHER - 129 415 - -
Vimu11g00280 518 FunFam Plant intracellular Ras-group-related LRR protein 4 179 487 - -
Vimu11g00280 518 SMART LRR_typ_2 312 335 IPR003591 -
Vimu11g00280 518 SMART LRR_typ_2 289 311 IPR003591 -
Vimu11g00280 518 SMART LRR_typ_2 220 242 IPR003591 -
Vimu11g00280 518 SMART LRR_typ_2 429 451 IPR003591 -
Vimu11g00280 518 SMART LRR_typ_2 266 288 IPR003591 -
Vimu11g00280 518 SMART LRR_typ_2 336 358 IPR003591 -
Vimu11g00280 518 SMART LRR_typ_2 243 265 IPR003591 -
Vimu11g00280 518 SMART LRR_typ_2 381 404 IPR003591 -
Vimu11g00280 518 SUPERFAMILY L domain-like 191 465 - -
Vimu11g00280 518 SMART LRR_bac_2 289 308 - -
Vimu11g00280 518 SMART LRR_bac_2 312 331 - -
Vimu11g00280 518 SMART LRR_bac_2 381 400 - -
Vimu11g00280 518 SMART LRR_bac_2 335 354 - -
Vimu11g00280 518 SMART LRR_bac_2 429 448 - -
Vimu11g00280 518 SMART LRR_bac_2 266 285 - -
Vimu11g00280 518 SMART LRR_bac_2 243 262 - -
Vimu11g00280 518 Pfam Leucine rich repeat 268 325 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00280 Vimu-Chr11 2803222 2805236 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00280 292 466 Receptor kinase-like Gene Family AT3G11080 33.880 1.63e-13 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00280 - - gmx:100798442 860.907
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g00280 11 2803222 2805236 Vimu11g00280 11 2803222 2805236 ECH