LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu10g03777	ATGGATACCGGCAGCAATTCTTTACCATCTGCACCTGATGGGGTTAAGAGAAAGGTTTGCTATTTCTATGATCCAGAGGTTGGGAATTACTATTACGGGCAAGGTCACCCTATGAAGCCACATCGTATACGGATGACACATGCTCTTCTTGCTCATTATGGATTGCTTCAGCACATGCAGGTCCATAAGCCATTTCCTGCTAGAGACCGGGACCTTTGTCGTTTTCATGCCGATGATTATGTTGCATTCCTTCGAAGCATAACTCCTGAAACACAGCAGGATCATCTTAGGCAACTCAAACGCTTTAATGTTGGTGAAGATTGTCCTGTTTTTGATGGCCTCTACTCTTTCTGTCAAACTTATGCAGGGGGGTCGGTTGGGGGTGCAGTGAAGTTAAATCATGACCAATGTGATATCGCTGTCAATTGGGCTGGTGGGTTGCATCATGCCAAGAAGTGCGAGGCTTCTGGATTTTGCTATGTTAATGATATAGTCCTTGCAATCTTAGAACTTCTTAAACAGCATGAGCGTGTTTTATATGTGGACATTGATATCCACCATGGAGACGGTGTGGAGGAAGCATTCTATACTACAGATAGAGTCATGACTGTTTCTTTTCATAAATTCGGAGACTATTTTCCTGGTACTGGGGATGTACGCGATATTGGATATGGAAAGGGAAAATACTATTCTCTTAATGTTCCACTTGATGATGGCATTGATGATGAGAGTTATCATTTCTTGTTCAAACCAATAATTGGCAAAGTAATGGAAGTGTTCAGGCCTGGTGCAGTAGTTCTTCAGTGTGGTGCTGATTCTCTATCTGGAGACCGATTGGGATGTTTCAATCTTTCAATTAGGGGACATGCAGAGTGTGTTAAATACATGAGATCATTCAACGTGCCCCTCTTGCTACTAGGTGGTGGTGGCTACACCATTCGGAATGTTGCTCGCTGTTGGTGCTATGAGACAGGAGTTGCTCTTGGAATAGAAGTTGATGACAAAATGCCACAACACGAGTATTATGAATATTTTGGTCCAGATTATACCCTTCATGTTGCCCCAAGTAACATGGAAAACAAGAATTCCCGTCATTTACTTGAAGAAATTCAATCAAAGCTGCTTGAGAATCTTTCCAGGCTGCAGCATGCTCCTAGTGTCCAATTTCAGGAAAGGCCTCCGGATTCTGATCTTGGAGAGGTAAACTTCTGTCACTTATTTTACTGCATTTTCCCAAATTGGCTCTTTTTTAACTGCTTGGGCAAGTGCAAAACTCTACTCTCCTGCAATCACAATGTACCTTTTTTGACTGTTATATGTTCCAATCCCACTCTGCTATTTCAGTCACTCTTTGTCTCTGCTGCCGGTGACCACAACCATTTGCTGTTGGTCGCCACCCTTTGTTGTCAACTACCATCACCTACTATTGGCCACTATTGCATGTGTTTGTGA	1452	0.4284	MDTGSNSLPSAPDGVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQHMQVHKPFPARDRDLCRFHADDYVAFLRSITPETQQDHLRQLKRFNVGEDCPVFDGLYSFCQTYAGGSVGGAVKLNHDQCDIAVNWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDVRDIGYGKGKYYSLNVPLDDGIDDESYHFLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIRGHAECVKYMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGIEVDDKMPQHEYYEYFGPDYTLHVAPSNMENKNSRHLLEEIQSKLLENLSRLQHAPSVQFQERPPDSDLGEVNFCHLFYCIFPNWLFFNCLGKCKTLLSCNHNVPFLTVICSNPTLLFQSLFVSAAGDHNHLLLVATLCCQLPSPTIGHYCMCL	483

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu10g03777	483	FunFam	Histone deacetylase	15	392	-	-
	Vimu10g03777	483	Gene3D	Histone deacetylase domain	15	388	IPR037138	-
	Vimu10g03777	483	PANTHER	HISTONE DEACETYLASE 2-RELATED	7	341	-	-
	Vimu10g03777	483	PRINTS	Histone deacetylase signature	38	55	IPR003084	GO:0004407\|GO:0016575
	Vimu10g03777	483	PRINTS	Histone deacetylase signature	102	119	IPR003084	GO:0004407\|GO:0016575
	Vimu10g03777	483	PRINTS	Histone deacetylase signature	164	180	IPR003084	GO:0004407\|GO:0016575
	Vimu10g03777	483	PRINTS	Histone deacetylase signature	71	89	IPR003084	GO:0004407\|GO:0016575
	Vimu10g03777	483	PRINTS	Histone deacetylase signature	223	236	IPR003084	GO:0004407\|GO:0016575
	Vimu10g03777	483	PRINTS	Histone deacetylase signature	240	258	IPR003084	GO:0004407\|GO:0016575
	Vimu10g03777	483	PRINTS	Histone deacetylase signature	123	143	IPR003084	GO:0004407\|GO:0016575
	Vimu10g03777	483	PRINTS	Histone deacetylase superfamily signature	262	272	IPR000286	-
	Vimu10g03777	483	PRINTS	Histone deacetylase superfamily signature	145	168	IPR000286	-
	Vimu10g03777	483	PRINTS	Histone deacetylase superfamily signature	177	192	IPR000286	-
	Vimu10g03777	483	Pfam	Histone deacetylase domain	36	324	IPR023801	-
	Vimu10g03777	483	SUPERFAMILY	Arginase/deacetylase	17	381	IPR023696	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu10g03777	Vimu-Chr10	46464536	46467836	Transposed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu10g03777	K06067		-	gmx:100795375	845.114

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vimu10g03777	10	46464536	46467836	Vimu10g03777	10	46464536	46467836	ECH