Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03768 ATGGAGAACAGGGTAACATTACAAGAATGGTTTGACCGCGTTGACTCGGAGAAAAGTGGAAGCATAACGGCGGTGCAGCTGAAGGCAGCTCTGGCTGTGGGCAACCTGCAATTCCCCCTCTCAGTGGTTCACCAGATGATCAGGATGTACGATTTCGACAGAAATGGTACCATGAGCTTTCAAGAATTTGTTGCACTCAACAACTTCCTTCTTAAGGTTCAACATGCATTTTCGGACCTAGAGAGGGGTCGTGGTTTTCTTGTGCCTGATGATGTATTTGAGGCTTTGGTAAAAATTGGTTTCACGCTGGATTCTCCTGCTTTTTACACTGTCTGTGAGAGCTTTGATCAAAGTAAAAATGGAAGGTTTCGGCTGGACGACTTCATATCAATCTGTATATTCTTACAATCAGCACGGAATCTGTTTAATTCTTTTGATACAGCAAAACAAGGCAGAGTTACTCTCGATCTGAATCAATTTGTGTATTGTAGTAAGTACACACTAAGCTGCCTTATATAA 519 0.4239 MENRVTLQEWFDRVDSEKSGSITAVQLKAALAVGNLQFPLSVVHQMIRMYDFDRNGTMSFQEFVALNNFLLKVQHAFSDLERGRGFLVPDDVFEALVKIGFTLDSPAFYTVCESFDQSKNGRFRLDDFISICIFLQSARNLFNSFDTAKQGRVTLDLNQFVYCSKYTLSCLI 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03768 172 SUPERFAMILY EF-hand 2 163 IPR011992 -
Vimu10g03768 172 ProSiteProfiles EF-hand calcium-binding domain profile. 2 37 IPR002048 GO:0005509
Vimu10g03768 172 Gene3D - 1 167 - -
Vimu10g03768 172 Pfam EF-hand domain pair 19 66 IPR002048 GO:0005509
Vimu10g03768 172 SMART efh_1 6 34 IPR002048 GO:0005509
Vimu10g03768 172 SMART efh_1 42 70 IPR002048 GO:0005509
Vimu10g03768 172 PANTHER PEFLIN 6 163 - -
Vimu10g03768 172 ProSiteProfiles EF-hand calcium-binding domain profile. 38 73 IPR002048 GO:0005509
Vimu10g03768 172 ProSitePatterns EF-hand calcium-binding domain. 51 63 IPR018247 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03768 7 131 EF-hand Containing Proteins AT5G04870 27.273 7.04e-12 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03768 - - gmx:100792880 311.997
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03768 10 46359774 46361956 Vimu10g03768 10 46359774 46361956 ECH