Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03762 ATGCTCAAACATCGCAACGACGGAGCCTGCCCAGCCAGAGGCTTCTACACCTACGATGCCTTCATCGCCGCTGCCAGTGCTTTCCCCAGCTTCGGCAACAGCGGAGACACAGCCACTCGAAAGAGGGAGATTGCGGCCTTCTTCGGGCAAACGTCTCACGAAACAACCGGAGGATGGCCCAGTGCACCTGACGGACCATACGCATGGGGATACTGCTTCCTGAGAGAGCGGAACCCAAGCGGCCAGCAATACTATGGTAGGGGTCCCATCCAGATATCCTGGAACTACAACTACGGTCAGTGCGGAAATGCAATTGGGGTTGATTTGATCAACAATCCTGATCTCGTCGCCACTGACGCTGTCATCTCCTTCAAGTCCGCCATCTGGTTCTGGATGACTCCACAGTCCCCCAAGCCTTCTTCTCACGACGTCATCACCTCTCAATGGACCCCCTCCTCAGCCGACGTTGCCGCCGGGAGGCTTCCGGGCTACGGCACTGTGACAAACATCATCAACGGAGGCCTGGAGTGCGGCAGAGGACAGGATAGCAGGGTGGAGGACCGCATCGGGTTCTTCAAGAGATACTGTGATCTGCTTGGAGTTGGTTATGGCAACAACCTTGACTGCTACTCTCAGACCCCATTCGGAAATTCTGTGCTTAATCTCCATCCCTTCGTCTGA 681 0.558 MLKHRNDGACPARGFYTYDAFIAAASAFPSFGNSGDTATRKREIAAFFGQTSHETTGGWPSAPDGPYAWGYCFLRERNPSGQQYYGRGPIQISWNYNYGQCGNAIGVDLINNPDLVATDAVISFKSAIWFWMTPQSPKPSSHDVITSQWTPSSADVAAGRLPGYGTVTNIINGGLECGRGQDSRVEDRIGFFKRYCDLLGVGYGNNLDCYSQTPFGNSVLNLHPFV 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03762 226 SUPERFAMILY Lysozyme-like 1 216 IPR023346 -
Vimu10g03762 226 Gene3D - 1 215 - -
Vimu10g03762 226 PANTHER CHITINASE-RELATED 1 213 - -
Vimu10g03762 226 PIRSF Endochitinase 1 216 IPR016283 GO:0004568|GO:0005975
Vimu10g03762 226 Pfam Chitinase class I 1 209 IPR000726 GO:0004568|GO:0006032|GO:0016998
Vimu10g03762 226 CDD chitinase_GH19 1 209 - -
Vimu10g03762 226 ProSitePatterns Chitinases family 19 signature 1. 10 32 IPR000726 GO:0004568|GO:0006032|GO:0016998
Vimu10g03762 226 ProSitePatterns Chitinases family 19 signature 2. 122 132 IPR000726 GO:0004568|GO:0006032|GO:0016998
Vimu10g03762 226 Gene3D Endochitinase, domain 2 75 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03762 Vimu-Chr10 46343685 46344404 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03762 1 220 Glycoside Hydrolase AT3G12500 71.368 7.46e-125 355
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03762 K20547 - qsa:O6P43_002167 403.29