Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03761 ATGGAAAGGTTGGCGTTTCTTCCATTTGCACAGTCACAATTGCTCCTACCGCTTCCAAAGGTTGCCGCCATTCCCACTCCACACAATAGTAACACTAATGATAATAATACCAATGTTGCTTCTGATTGTGTTTCTAATAGTATTCGTGATTGCCATTGTGCTCAGGATTTCTGTCTCTCAGACCGCACCGTCGACGCGGGTTTCGCACATGGTGTTCCTCTTCCCCAACACCAACAACAGAAACAGCAACAAGTCACAGTGAATCCAAATTCTAGATTTCTTCATTTTTATGCTTCCCGCGGTCACAAGCTTCTTCCCAGCGCTTCTCTCGTCCCCGATGATCCCACTGTTCTACTCACCATCGCCGGGATGCTCCAATTCAAGCCCATCTTCCTCGGCAAGAGATGCATCCGTACTAATGATATCAACAATGTTGGCCTGACTGCCAGACATCATACCTTCTTTGAAATGCTTGGAAACTTCAGCTTTGGTGATTACTTCAAAAAACAAGCTATTCTATGGGCGTGGGAGCTTTCCACCTCAGAGTTTGGTTTGCCCCCGGACCGATTGTGGGTTAGTGTTTATAAAGATGATGATGAGGCTTTTCAGCTATGGTCTAATGAGGTTGGTGTCCCAGTTGAACGCATAAAAAGGTTGGGAGAAGAAGATAACTTCTGGACTAGTGGGGTGACAGGTCCCTGTGGTCCTTGCTCAGAACTTTATTATGATTTTCATCCTGAGAGGGGACATGTAGATGCTGATCTCAATGACGATACAAGGTTTATAGAGTTCTACAACTTAGTCTTCATGCAATACAACAAAAAAGATGATGGTTCTCTTGAACCTCTAAAACAGAAGAACATAGACACTGGTCTTGGACTGGAGCGTTTGGCTCGTATTCTTCAACAGGTTCCAAACAATTATGAAACTGACTTGATTTTCCCCATCATAGAGAAGGCCTCTAAGTTAGCAAATGTTTCTTATGGTTTTGCTGATGATCAGACAAAGAGGAATCTGAAAATTATAGGAGATCACATGCGTGCAATTGTATTTCTCATCTCTGATGGAGTTGTCCCATCAAATGTTGGGAGAGGTTATGTAGTTCGGCGGCTTATTAGAAGGGTTGTTCGTACAGGCAGGTTGCTTGGTATAAAGGGTGATGGTAGGGGAGACCTTGAAGGAGCGTTTTTACCGATTATTGCTGAGAAGGTAGTGGAATTAAGTACACAGATTGATGCTGATGTCAAGAACAAAGCACCTCGTATCTTTGAGGAGCTGAAGAGAGAAGAGCTTCGGTTTGTGCAGACACTGGAGAGAGGAGAAAAGTTGCTTGAGGAGAAACTTTCTGATGCTTTATCAAATGCAGAAAGAAATGGAACTGTTCCTTGCTTGGCTGGCGAAGACGTGTTTCTGTTGTATGATACTTATGGATATCCAATGGAAATAACAAAAGAAGTGGCTGAAGAACGTGGTGTGAGTATTGATATGGATGGTTTTGATATTGAGATGGAGAAGCAAAGGCGTCAATCTCAAGCTGCTCATAATACTGTCAGACTTGCCATTGAAAATGGGGAAAATGTTGCTGAGAATGTACGTGACACCGAATTTATAGGATATGACAGACTTCATTGTAAAGCAATGATAGAAAGCTTAATGGTGAATGGAAATCCAGCTGTACAGGTCAGTGAAGGGAGTAATGTGGAAGTTTTACTGAACAAGACTCCATTTTATGCTGAATCAGGGGGTCAAATTGGCGATCATGGTTTTCTATATATTTCAGAGGGTGATAATCAATCAAAAGCTGTTGTGGAGATAATAGATGTTCAGAAATCTTTAGGCAATATATTTGTGCACAAGGGTACAGTCCAAAAGGGTGTTGTAGAGGTTGGCAAAGAAGTGGAAGCAGCAGTTGATTTGAAGCTGAGGCAGCGAGCTAAGGTTCATCATACTGCTACTCATTTACTACAAGCTGCACTTAAAAAGGTTATTGGTCAAGAGACCTCACAAGCTGGTTCGTTGGTGGCATTTGATCGTCTCAGATTTGATTTCAACTTCCACCGACCACTTCGTGATAGTGAGCTTGCTGAAATTGAACTGCTGATCAATGGATGGATTGAAGATGCAACACTACTTCAAACCAAAGTGATGCCCCTTGCTGATGCAAAAAGTGCTGGGGCTATTGCAATGTTTGGAGAAAAATATGGAGAAGAGGTACGTGTGGTAGAGGTTCCTGGTGTATCAATGGAACTATGTGGTGGGACTCATGTCAATAATACTTCTGAAATTCGTGGCTTTAAAATAATATCAGAACAGGGTATTGCATCTGGAATCAGGCGAATTGAAGCTGTAGCTGGCGAAGCCTTCATTGAATATATCAATGCCCGTGACTTTTATCTAAAGCAGCTATGTTCCACTCTCAAAGTTAAACCAGAAGAAGTGACAACAAGGATAGAGAACCTTTTGGAGGAGTTACGGGTAGTTAGAAATGAAAATTCTGCTGTGCGTGCAAAGGCAGCAATCTACAAAGCTTCAGGTATTGCGAGCAAAGCATTGTTGGTGGGGAATTCAAAACAGTACAGGGTGCTAGTTGAGTCCTTCGATGATGTTGATGCTGAATCACTTAAAAGTGCAGCAGAATATTTACTGGAAACACTAACAGATCCAGCAGCCGTGGTACTGGGCTCATGTCCAGTTGCTGCTTTTTCTCCAGGGGTGGTTGATCAGGGGATTCAGGCAGGTAAGTTTATTGGACAAATTGCAAAATTATGCGGCGGTGGAGGAGGTGGAAGGCCCAATTTTGCTCAGGCAGGTGGGAGGAAGCCTGAAAACTTGTCAAGTGCCCTCGATAAGGCTCGGTCAGAACTCATGGCTACTCTAAGTGAAAAAGGGAGATGTAAATGCAGGATGTATTCATACATGAAAGATAGTTTTGATAGTGAAAGACGATCAGGTGATTCATTCCTTTCTATATTGATTGCTCTGAAAGATGTTGGGATCACATAG 3003 0.4269 MERLAFLPFAQSQLLLPLPKVAAIPTPHNSNTNDNNTNVASDCVSNSIRDCHCAQDFCLSDRTVDAGFAHGVPLPQHQQQKQQQVTVNPNSRFLHFYASRGHKLLPSASLVPDDPTVLLTIAGMLQFKPIFLGKRCIRTNDINNVGLTARHHTFFEMLGNFSFGDYFKKQAILWAWELSTSEFGLPPDRLWVSVYKDDDEAFQLWSNEVGVPVERIKRLGEEDNFWTSGVTGPCGPCSELYYDFHPERGHVDADLNDDTRFIEFYNLVFMQYNKKDDGSLEPLKQKNIDTGLGLERLARILQQVPNNYETDLIFPIIEKASKLANVSYGFADDQTKRNLKIIGDHMRAIVFLISDGVVPSNVGRGYVVRRLIRRVVRTGRLLGIKGDGRGDLEGAFLPIIAEKVVELSTQIDADVKNKAPRIFEELKREELRFVQTLERGEKLLEEKLSDALSNAERNGTVPCLAGEDVFLLYDTYGYPMEITKEVAEERGVSIDMDGFDIEMEKQRRQSQAAHNTVRLAIENGENVAENVRDTEFIGYDRLHCKAMIESLMVNGNPAVQVSEGSNVEVLLNKTPFYAESGGQIGDHGFLYISEGDNQSKAVVEIIDVQKSLGNIFVHKGTVQKGVVEVGKEVEAAVDLKLRQRAKVHHTATHLLQAALKKVIGQETSQAGSLVAFDRLRFDFNFHRPLRDSELAEIELLINGWIEDATLLQTKVMPLADAKSAGAIAMFGEKYGEEVRVVEVPGVSMELCGGTHVNNTSEIRGFKIISEQGIASGIRRIEAVAGEAFIEYINARDFYLKQLCSTLKVKPEEVTTRIENLLEELRVVRNENSAVRAKAAIYKASGIASKALLVGNSKQYRVLVESFDDVDAESLKSAAEYLLETLTDPAAVVLGSCPVAAFSPGVVDQGIQAGKFIGQIAKLCGGGGGGRPNFAQAGGRKPENLSSALDKARSELMATLSEKGRCKCRMYSYMKDSFDSERRSGDSFLSILIALKDVGIT 1000
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03761 1000 Coils Coil 817 837 - -
Vimu10g03761 1000 Gene3D Bira Bifunctional Protein; Domain 2 88 305 IPR045864 -
Vimu10g03761 1000 NCBIfam alanine--tRNA ligase 92 938 IPR002318 GO:0000166|GO:0005737
Vimu10g03761 1000 PANTHER ALANYL-TRNA SYNTHETASE 90 954 - -
Vimu10g03761 1000 Pfam DHHA1 domain 818 953 IPR003156 GO:0003676
Vimu10g03761 1000 Pfam tRNA synthetases class II (A) 91 639 IPR018164 GO:0000166|GO:0004813|GO:0005524|GO:0006419
Vimu10g03761 1000 Gene3D - 709 762 - -
Vimu10g03761 1000 SUPERFAMILY Class II aaRS and biotin synthetases 91 308 IPR045864 -
Vimu10g03761 1000 Hamap Alanine--tRNA ligase [alaS]. 91 959 IPR023033 GO:0004813
Vimu10g03761 1000 FunFam Alanine--tRNA ligase 709 762 - -
Vimu10g03761 1000 ProSiteProfiles Alanyl-transfer RNA synthetases family profile. 84 794 IPR018165 GO:0003676|GO:0004813|GO:0005524|GO:0006419
Vimu10g03761 1000 SMART tRNA_SAD_4 738 781 IPR012947 GO:0004812|GO:0005524|GO:0043039
Vimu10g03761 1000 SUPERFAMILY ThrRS/AlaRS common domain 637 796 IPR018163 GO:0000166
Vimu10g03761 1000 Gene3D - 558 637 - -
Vimu10g03761 1000 FunFam Alanine--tRNA ligase 853 955 - -
Vimu10g03761 1000 FunFam Alanine--tRNA ligase, cytoplasmic 638 795 - -
Vimu10g03761 1000 Pfam Threonyl and Alanyl tRNA synthetase second additional domain 738 781 IPR012947 GO:0004812|GO:0005524|GO:0043039
Vimu10g03761 1000 Gene3D - 854 955 - -
Vimu10g03761 1000 Gene3D - 648 783 - -
Vimu10g03761 1000 FunFam Alanine--tRNA ligase 84 305 - -
Vimu10g03761 1000 Gene3D - 785 846 - -
Vimu10g03761 1000 Hamap Probable alanine--tRNA ligase, chloroplastic. 76 961 IPR027522 GO:0009507
Vimu10g03761 1000 FunFam Probable alanine--tRNA ligase, chloroplastic 523 637 - -
Vimu10g03761 1000 SUPERFAMILY Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 309 537 IPR018162 GO:0000166|GO:0004813|GO:0005524|GO:0005737|GO:0006419
Vimu10g03761 1000 CDD AlaRS_core 91 304 - -
Vimu10g03761 1000 PRINTS Alanyl-tRNA synthetase signature 364 377 IPR002318 GO:0000166|GO:0005737
Vimu10g03761 1000 PRINTS Alanyl-tRNA synthetase signature 140 151 IPR002318 GO:0000166|GO:0005737
Vimu10g03761 1000 PRINTS Alanyl-tRNA synthetase signature 289 302 IPR002318 GO:0000166|GO:0005737
Vimu10g03761 1000 PRINTS Alanyl-tRNA synthetase signature 262 273 IPR002318 GO:0000166|GO:0005737
Vimu10g03761 1000 PRINTS Alanyl-tRNA synthetase signature 340 356 IPR002318 GO:0000166|GO:0005737
Vimu10g03761 1000 SUPERFAMILY Translation proteins 532 637 IPR009000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03761 Vimu-Chr10 46331393 46337165 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03761 K01872 - gmx:100817906 1595.48