Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03753 ATGACGATCCATTCGATAGTGATACAGAAGCTGCTGAGCACGAATGCGCAGGTGGGTCGACGAGTTGTTGCTCACCATTTCAAGGGCTACACCTATGGCTTCCGCAACAGAATGGCCATCATCGACTCCGACAAAACCCTCATTTGCATGCGCAGCGCCTTCAACTTCATCGCCTCCCTCGCCCGCCACAACGCCCGCTTCATGTTCATCAACACCAACCCTCTCTTCGACGACATCTTCAACCTCATGACCAAGAAGGTTGGCTCCTACTCCTCCTCCACCAGCTCCCTCTGGCGCACCGGCGGCTTCCTCACCAACAGCTACAGCCCCAAGAAGTTCCGCTCCCGCAACAAGAAGCTCGTCTTCGGTCCCACCCAGTCCCCCGATTGCATCGTCATTGTCGACACCGACCGCAAGTCTAGCGTTATCAACGAGGCTTTCAAGCTTCAAATTCCCGTTGTTGCATTGGTCGACTCCGCCATGCCCCTCGATGTCTACAACCGCATTGCTTATCCTGTTCCCGCCAACGATTCTGTTCAATTTGTTTATCTGTTCTGTAATTTGATTACCAAAACACTGCTTCATGAGAAGAGCAAGGCTGCTGCTGCTGCGGCTGATTCTCGAGAAGAAGCTCTGCGCAAGGGCAAGAGCAAGAGCAAGAGCGATTTGGATAAGGTCGACTTAACCGTAGTTCCCTATGCTAGTTTAACTCCCTTACCCGAAGATACAGAGGAAACTAAGAAGCTTTTGGACAAGTTTGTTGTTCTGAAGATCAATGGTGCCCAAGGAAGAAATATGGATCTTGATGGTCCCAAATCTGCAATTAATATTAGTGATGGACAGACGTTCCTGGACATGATCATTAACCAGATTGAGATGCTCAACTCCAAGTATGGATGCAGGGTTCCTTTGCTGCTTTTCGACAAAAATGATATTGGGGATACTTCTCTAAAGGTTTTGGAGAAGTATTCGAAATCAAGTGTTGAAGTGCACACATTGAAGCCGGGTGAAAGTGGAGAATTGAAATTATCGGGTGAACATTCCAGTAAGGAGGAAATGCATCCATTTGATGAGGCGGAGGTGTTCCGTTCACTCATGACTGGTGGAACCCTTGATTCGTTATTGTCACAGGGTAAAGAGTATATCCTAGTGTTGAAGTCAGACAATGTGGCAACAATTGTTGATCCAAATATACTAAATCATTTGATGATAAATGATATTGAATATTGCATGGAGGTGACACCAAACCAATCATTTAACTTAATCTTAACCGCAATGAAATTTAAGTTGTCTTCAATATTTGTGCGAGTTTTATCATGTGCCGTTATATTTAAGCATATGAAGATGTGGGTGAGTTTAAGAGCCATCAAGAGATTTGTTGATGCTGATGAACTAAAGCAGGAGAAGCCCTCGGTTTTTAAGTTCTTTGGCAATGTAATTGGTGTATCCGTGCCCGAATCTCGGTTTTTTCCATTGGATGTAACATCAGATCTATTACTTCTCCAGTCGGATCTATACACTTGTAGAGAAGGTGTTTTAACTCGCAATCCAGCAAGAACTAATCATTCAAATCCTGTGATAGACTTGGGACCTGAATTTGAAAAGATTAGTGACTTCCAAAGTCGTTTCAAATCCATTCCAAGCATCATTGAGCTGGATAGTTTGAGGGTGAGAGGTGATGTGTGGTTTGGAGCTAATATTACTTTGAAGGTACAATTGACGTTCCTTTCCCTGTTCATCTGCATCACCCCAGTAAAGCCCCGAGCCCGTCCTACTCACCCAGTAAAACGGGGTTTAGAGACCTGGACTGAAATAAGACATGCACTTGCAGAACCCAGATATAGTGGTGGGCGAGTGACTATTTCTGCAAAACCTGACTTGAAATTGGAAATTCCAGATGGGGTGACGATTGAGAATAAGGAGATCAACGACCTTGCAGATATCTGA 1947 0.4499 MTIHSIVIQKLLSTNAQVGRRVVAHHFKGYTYGFRNRMAIIDSDKTLICMRSAFNFIASLARHNARFMFINTNPLFDDIFNLMTKKVGSYSSSTSSLWRTGGFLTNSYSPKKFRSRNKKLVFGPTQSPDCIVIVDTDRKSSVINEAFKLQIPVVALVDSAMPLDVYNRIAYPVPANDSVQFVYLFCNLITKTLLHEKSKAAAAAADSREEALRKGKSKSKSDLDKVDLTVVPYASLTPLPEDTEETKKLLDKFVVLKINGAQGRNMDLDGPKSAINISDGQTFLDMIINQIEMLNSKYGCRVPLLLFDKNDIGDTSLKVLEKYSKSSVEVHTLKPGESGELKLSGEHSSKEEMHPFDEAEVFRSLMTGGTLDSLLSQGKEYILVLKSDNVATIVDPNILNHLMINDIEYCMEVTPNQSFNLILTAMKFKLSSIFVRVLSCAVIFKHMKMWVSLRAIKRFVDADELKQEKPSVFKFFGNVIGVSVPESRFFPLDVTSDLLLLQSDLYTCREGVLTRNPARTNHSNPVIDLGPEFEKISDFQSRFKSIPSIIELDSLRVRGDVWFGANITLKVQLTFLSLFICITPVKPRARPTHPVKRGLETWTEIRHALAEPRYSGGRVTISAKPDLKLEIPDGVTIENKEINDLADI 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03753 648 SUPERFAMILY Ribosomal protein S2 8 202 IPR023591 -
Vimu10g03753 648 PRINTS Ribosomal protein S2 signature 169 183 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vimu10g03753 648 PRINTS Ribosomal protein S2 signature 128 145 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vimu10g03753 648 PRINTS Ribosomal protein S2 signature 145 156 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vimu10g03753 648 PRINTS Ribosomal protein S2 signature 8 26 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vimu10g03753 648 Gene3D Hexapeptide repeat proteins 494 577 - -
Vimu10g03753 648 PANTHER - 94 648 IPR016267 GO:0003983|GO:0006011
Vimu10g03753 648 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 194 492 IPR029044 -
Vimu10g03753 648 Pfam UTP--glucose-1-phosphate uridylyltransferase 229 570 IPR002618 GO:0070569
Vimu10g03753 648 Gene3D - 2 193 - -
Vimu10g03753 648 FunFam UTP--glucose-1-phosphate uridylyltransferase 493 577 - -
Vimu10g03753 648 SUPERFAMILY Nucleotide-diphospho-sugar transferases 227 571 IPR029044 -
Vimu10g03753 648 Pfam Ribosomal protein S2 12 108 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vimu10g03753 648 Pfam Ribosomal protein S2 125 193 IPR001865 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03753 Vimu-Chr10 46279079 46288857 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03753 K00963 - gmx:100812583 890.182