Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03730 ATGGCCCATGTCCTTTTCCTTATGGTCATCGTTTCCACCATTGTGGTTGCGGCACATGGACGTGGTCACCATAAAAGTGAGTATGGTCGTTACATGACTGCTCAGAATGTCACTTACGATGGTAAGTCAATGTTCATTAACGGAAGGCGTGAGCTGCTCTTTTCTGGTTCCATCCATTATACACGAAGCACACCAGATATGTGGCCTGTCCTTCTTGATAATGCAAGACGTGGAGGGATAAATGTCATCCAAACCTACGTGTTTTGGAATGCTCATGAGCCCATACAAGGACAGTTCAACTTTGAAGGTAATTACGACTTGGTGAAGTTTATTAAGCTTGTTCAAGAGCATGGAATGTTTGTCACTCTCAGGGTTGGACCCTTCATCCAAGCCGAGTGGAACCACGGAGGACTTCCATATTGGCTTAGAGAGATTCCTAACATCATATTCCGCTCTGATAATGAGCCTTATAAGCAACACATGCAAGCATTCGTGACAAAGATTGTACAAATGATGAAAGATGAGAAGCTCTTTGCTCCCCAAGGAGGCCCCATCATCTTAGCTCAGATTGAGAATGAGTACAACCACATTCAACTTGCATACGAGGAGAAGGGAGTCAGTTATGTCCAATGGGCTGCAAACATGGCAGTAGCATTGGATGTTGGAGTTCCATGGGTCATGTGCAAGCAAAGAGATGCACCTGATCCAGTGATCAATGCATGCAATGGAAGACATTGCGGTGATACATTCTCAGGACCAAACAAACCATACAAACCAGCCATATGGACAGAGAATTGGACCGCTCAGTACAGAGTACATGGAGATCCACCATCCCAAAGATCCGCAGAAGATATTGCATTTTCAATTGCTCGATTTTTCTCCAAGGGTGGAAACTTGGTCAACTACTATATGTACCACGGAGGAACAAACTTTGGTAGAACCAGTTCTGCCTTTACCACGACTCGTTATTATGATGAGGCCCCTCTTGATGAATACGGTTTACAAAGAGAACCAAAATGGAGTCATTTGAGAGATGTGCATAAAGCTGTGCTCCTTAGCAGGAAGGCTATCCTTGGTGGTGATCCCAATGTAGAAAAGTTGAATGAATTCCATGAGATTGTTTCACAACATAATTCGAGGAACTACGAGAGATCTCCAATTGCAAACAATTTCCAATGGGAGATGTTCATTGAGGCCATCCCAACAGCTAAAAAAATGGATATGTACCAAAAAATTCCGGCAGAGCTTTACAGTTTGCTCAAGGACACTACTGATTATGCTTGGTACACCACCAGCTTTGAGTTGGCTCCAGAAGACTTGCCAATAAAGCCTGGAGTTCTCCCAATTCTTCGTATTATGAGTCTCGGACACACAATGGTTGCATTTGTAAATGGAGACCTCGTTGGAACTGCTCATGGAACTCATGAAGAAAAATCTTTTGATTTTCAACGACCAGTTCAACTAAGAGTTGGAACCAACTATATTTCCATCCTCGCTGGCACAGTTGGATTACCTGACAGTGGAGCTTACATGGAACATAGATACGCAGGACCCAAGTCCATATCCATCATCGCTCTCAACACAGGAACACTTGATATCACTACCAATACGTGGGGTCATCGGGTTGGACTCAGGGGTGAAGGCATGAAAGTTTTCAGTGATGAAGGATCATTAAAGACAAAATGGATGCCACTCAGTCCAATCCCACGTCCTCTCACCTGGTATAGGACAAGATTTGTCACTCCAGAGGGAACAGGTCCAGTTGCGATCAGGATGACTGGAATGGGCAAAGGAATGATGTGGATCAATGGTAATAGCATTGGTCGCCACTGGATGAGTTTCCTCTCCCCACTTGGAAAGCCCACACAATCAGAGTTCCACATCCCAAGATCTTTTCTCAACCCACAAGACAACTTGCTTGTTATATTTGAAGAGGAACCATTGGCTCCATTACAAGTTGAGATCTTGAACGTGAATAGAGACACGATTTGCAGTTTCATTGCAGAGAACGACCCTGCCAATGTGAATTCATGGGTGTCCAGAAGAGGAAATTTTCATCCTATTATGCCATACATTGGACCCCAGGCCTCACTAATGTGTGCACCTGGGAAAAAGATCATGACTGTTGAGTTTGCCAGCTTTGGCAATCCAAGTGGTTATTGTGGAGAGTATACTTTAGGAACTTGTAATGCTGCTGCTACCAAGCAAATCGTAGAGCAAGAATGCTTAGGAAAAGAAACTTGCTCAATTGCATTAAATCGTGCAGTGTTCAACCAAAATGGTGCGGATCCATGCCCAGAAATATTGGTTAAAACTCTTGCAATCCAAATGTGGCCTGTCCTTCTTGATAATGCAAGACGTGGAGGCATAAATGTCATCCAAACCTACGTGTTTTGGAATGCTCATGAGCCCATACAAGGACAGTTCAACTTTGAAGGTAATTACGACTTGGTGAAGTTTATTAAGCTTGTTCAAGAGCATGGAATGTTTGTCACTCTCAGGGTTGGACCCTTCATCCAAGCCGAGTGGAACCACGGAGGACTTCCATATTGGCTTAGAGAGGTTCCTAACATCATATTCCGCTCTGATAATGAGCCTTATAAGCAACACATGCAAGCATTCGTGACAAAGATTGTACAAATGATGAAAGATGAGAAGCTCTTTGCTCCCCAAGGAGGCCCCATCATCTTAGCTCAGATTGAGAATGAGTACAACCACATTCAACTTGCATACGAGGAGAAGGGAGTCAGTTATGTCCAATGGGCTGCAAACATGGCAGTAGCATTGGATGTTGGAGTTCCATGGGTCATGTGCAAGCAAAGAGATGCACCTGATCCAGTGATCAATGCATGCAATGGAAGACATTGCGGTGATACATTCTCAGGACCAAACAAACCATACAAACCAGCCATATGGACAGAGAATTGGACTGCTCAGTACAGAGTACATGGAGATCCACCATCCCAAAGATCCGCAGAAGATATTGCATTTTCAATTGCTCGATTTTTCTCCAAGGGTGGAAACTTGGTCAACTACTATATGTACCACGGAGGAACAAACTTTGGTAGAACCAGTTCTGCATTTACCACAACTCGTTATTATGATGAGGCACCTCTTGATGAATACGGTTTACAAAGAGAACCAAAATGGAGTCATTTAAGAGATGTTCATAAAGCCGTGCTCCTTTGCAGGAAGGCTATCCTTGGTGGCGATCCCAATGTAGAAAAGTTGAACGAATTTCATGAGATTGTTTCACAACATAATTCGAGGAACTACGAGAGATCTCCAATTGCAAACAATTTCCAATGGGAGATGTTCATTGAGGCCATCCCAACAGCTAAAAAAATGGATATGTACCAAAAAATTCCGGCAGAGCTTTACAGTTTGCTCAAGGACACTACTGATTATGCTTGGTACACCACCAGCTTTGAGTTGGCTCCAGAAGACTTGCCAATAAAGCCTGGAGTTCTCCCAATTCTTCGTATTATGAGTCTCGGACACACAATGGTTGCATTTGTAAATGGAGACCTCGTTGGAACTGCTCATGGAACTCATGAAGAAAAATCTTTTGATTTTCAACGACCAGTTCAACTAAGAGTTGGAACCAACTATATTTCCATCCTCGCTGGCACAGTTGGATTACCTGACAGTGGAGCTTACATGGAACATAGATATGCAGGACCCAAGTCCATATCCATCATCGCTCTCAACACAGGAACACTTGATATCACTACCAATACATGGGGTCATCGGGTTGGACTCAAGGGTGAAGGCATGAAAGTTTTCAGTGATGAAGGATCATTAAAGACAAAATGGATGCCACTCAGTCCAATCCCACGTCCTCTCACCTGGTATAGGACAAGATTTGCCACTCCAGAGGGAACAGGTCCAGCTGCCATCAGGATGACTGGAATGGGCAAAGGAATGATGTGGATCAATGGTAATAGCATTGGTCGCCACTGGATGAGTTTCCTCTCCCCACTTGGAAAGCCCACACAATCAGAGTTCCACATCCCAAGATCTTTTCTCAACCCACAAGACAACTTGCTTGTTATATTTGAAGAGGAACCATTGGCTCCATTACAAGTTGAGATCTTGAACGTGAATAGAGACACAATTTGCAGTTTCATTGCAGAGAACGACCCTGCCAATGTGAATTCATGGGTGTCCAGAAGAGGAAATTTTCATCCTATTGTGCCATACATTGGACCCCAAGCCTCACTAATGTGTGCACCTGGGAAAAAGATTATGAATGTTGAATTTGCCAGCTTTGGCAATCCAAGTGGTTATTGTGGAGAGTATATTTTAGGAACTTGTAATGTTGCTGCTACCAAGCAAATCGTGGAGCAAGAATGCTTAGGCAAAGAAACTTGCTCAGTTACATTAAATCGTGCTGTGTTCAACCAAAATGGTGTGGATCCATGCCCAGAAATATTGGTGAAAACCCTTGCAATCCAAGTAAGATGTTCTTAG 4473 0.4357 MAHVLFLMVIVSTIVVAAHGRGHHKSEYGRYMTAQNVTYDGKSMFINGRRELLFSGSIHYTRSTPDMWPVLLDNARRGGINVIQTYVFWNAHEPIQGQFNFEGNYDLVKFIKLVQEHGMFVTLRVGPFIQAEWNHGGLPYWLREIPNIIFRSDNEPYKQHMQAFVTKIVQMMKDEKLFAPQGGPIILAQIENEYNHIQLAYEEKGVSYVQWAANMAVALDVGVPWVMCKQRDAPDPVINACNGRHCGDTFSGPNKPYKPAIWTENWTAQYRVHGDPPSQRSAEDIAFSIARFFSKGGNLVNYYMYHGGTNFGRTSSAFTTTRYYDEAPLDEYGLQREPKWSHLRDVHKAVLLSRKAILGGDPNVEKLNEFHEIVSQHNSRNYERSPIANNFQWEMFIEAIPTAKKMDMYQKIPAELYSLLKDTTDYAWYTTSFELAPEDLPIKPGVLPILRIMSLGHTMVAFVNGDLVGTAHGTHEEKSFDFQRPVQLRVGTNYISILAGTVGLPDSGAYMEHRYAGPKSISIIALNTGTLDITTNTWGHRVGLRGEGMKVFSDEGSLKTKWMPLSPIPRPLTWYRTRFVTPEGTGPVAIRMTGMGKGMMWINGNSIGRHWMSFLSPLGKPTQSEFHIPRSFLNPQDNLLVIFEEEPLAPLQVEILNVNRDTICSFIAENDPANVNSWVSRRGNFHPIMPYIGPQASLMCAPGKKIMTVEFASFGNPSGYCGEYTLGTCNAAATKQIVEQECLGKETCSIALNRAVFNQNGADPCPEILVKTLAIQMWPVLLDNARRGGINVIQTYVFWNAHEPIQGQFNFEGNYDLVKFIKLVQEHGMFVTLRVGPFIQAEWNHGGLPYWLREVPNIIFRSDNEPYKQHMQAFVTKIVQMMKDEKLFAPQGGPIILAQIENEYNHIQLAYEEKGVSYVQWAANMAVALDVGVPWVMCKQRDAPDPVINACNGRHCGDTFSGPNKPYKPAIWTENWTAQYRVHGDPPSQRSAEDIAFSIARFFSKGGNLVNYYMYHGGTNFGRTSSAFTTTRYYDEAPLDEYGLQREPKWSHLRDVHKAVLLCRKAILGGDPNVEKLNEFHEIVSQHNSRNYERSPIANNFQWEMFIEAIPTAKKMDMYQKIPAELYSLLKDTTDYAWYTTSFELAPEDLPIKPGVLPILRIMSLGHTMVAFVNGDLVGTAHGTHEEKSFDFQRPVQLRVGTNYISILAGTVGLPDSGAYMEHRYAGPKSISIIALNTGTLDITTNTWGHRVGLKGEGMKVFSDEGSLKTKWMPLSPIPRPLTWYRTRFATPEGTGPAAIRMTGMGKGMMWINGNSIGRHWMSFLSPLGKPTQSEFHIPRSFLNPQDNLLVIFEEEPLAPLQVEILNVNRDTICSFIAENDPANVNSWVSRRGNFHPIVPYIGPQASLMCAPGKKIMNVEFASFGNPSGYCGEYILGTCNVAATKQIVEQECLGKETCSVTLNRAVFNQNGVDPCPEILVKTLAIQVRCS 1490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03730 1490 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 182 194 IPR019801 GO:0004553|GO:0005975
Vimu10g03730 1490 ProSiteProfiles SUEL-type lectin domain profile. 690 766 IPR000922 GO:0030246
Vimu10g03730 1490 SUPERFAMILY Galactose-binding domain-like 1097 1228 IPR008979 -
Vimu10g03730 1490 SUPERFAMILY Galactose-binding domain-like 1245 1394 IPR008979 -
Vimu10g03730 1490 Pfam Glycosyl hydrolases family 35 776 1059 IPR031330 -
Vimu10g03730 1490 Pfam Glycosyl hydrolases family 35 43 349 IPR031330 -
Vimu10g03730 1490 CDD Gal_Rha_Lectin_BGal 691 776 - -
Vimu10g03730 1490 Gene3D Glycosidases 774 1062 - -
Vimu10g03730 1490 Gene3D Glycosidases 33 353 - -
Vimu10g03730 1490 PRINTS Glycosyl hydrolase family 35 signature 261 276 IPR001944 GO:0004553|GO:0005975
Vimu10g03730 1490 PRINTS Glycosyl hydrolase family 35 signature 180 195 IPR001944 GO:0004553|GO:0005975
Vimu10g03730 1490 PRINTS Glycosyl hydrolase family 35 signature 298 313 IPR001944 GO:0004553|GO:0005975
Vimu10g03730 1490 PRINTS Glycosyl hydrolase family 35 signature 570 584 IPR001944 GO:0004553|GO:0005975
Vimu10g03730 1490 PRINTS Glycosyl hydrolase family 35 signature 597 613 IPR001944 GO:0004553|GO:0005975
Vimu10g03730 1490 PRINTS Glycosyl hydrolase family 35 signature 68 86 IPR001944 GO:0004553|GO:0005975
Vimu10g03730 1490 PRINTS Glycosyl hydrolase family 35 signature 123 142 IPR001944 GO:0004553|GO:0005975
Vimu10g03730 1490 PRINTS Glycosyl hydrolase family 35 signature 317 333 IPR001944 GO:0004553|GO:0005975
Vimu10g03730 1490 PRINTS Glycosyl hydrolase family 35 signature 47 64 IPR001944 GO:0004553|GO:0005975
Vimu10g03730 1490 PANTHER BETA-GALACTOSIDASE RELATED 31 693 IPR001944 GO:0004553|GO:0005975
Vimu10g03730 1490 CDD Gal_Rha_Lectin_BGal 1401 1489 - -
Vimu10g03730 1490 FunFam Beta-galactosidase 33 353 - -
Vimu10g03730 1490 SUPERFAMILY (Trans)glycosidases 775 1063 IPR017853 -
Vimu10g03730 1490 SUPERFAMILY Galactose-binding domain-like 387 518 IPR008979 -
Vimu10g03730 1490 ProSiteProfiles SUEL-type lectin domain profile. 1400 1490 IPR000922 GO:0030246
Vimu10g03730 1490 FunFam Beta-galactosidase 1250 1374 - -
Vimu10g03730 1490 FunFam Beta-galactosidase 767 1063 - -
Vimu10g03730 1490 Pfam Galactose binding lectin domain 1408 1489 IPR000922 GO:0030246
Vimu10g03730 1490 Pfam Galactose binding lectin domain 698 776 IPR000922 GO:0030246
Vimu10g03730 1490 SUPERFAMILY (Trans)glycosidases 35 351 IPR017853 -
Vimu10g03730 1490 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 892 904 IPR019801 GO:0004553|GO:0005975
Vimu10g03730 1490 SUPERFAMILY Galactose-binding domain-like 535 684 IPR008979 -
Vimu10g03730 1490 FunFam Beta-galactosidase 540 664 - -
Vimu10g03730 1490 Gene3D - 1402 1490 IPR043159 -
Vimu10g03730 1490 Gene3D - 692 773 IPR043159 -
Vimu10g03730 1490 Gene3D - 356 514 - -
Vimu10g03730 1490 Gene3D - 1070 1224 - -
Vimu10g03730 1490 Gene3D - 549 666 - -
Vimu10g03730 1490 Gene3D - 1257 1376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03730 Vimu-Chr10 46160121 46176787 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03730 37 777 Glycoside Hydrolase AT2G16730 53.008 0.0 895
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03730 - - ccaj:109817195 1297.72