Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03726 ATGGAAACTCGGAGTCGGAAGCGGGCGGAGGCTTCCTCAGCTGCCCCTTCATCCTCGTCCACCTCTCGTTCCGCCAAGCGCTCTCGTCTTTCTTCTTCCTCTTCTTCGATCCCAAACACCCCAACTGTTAATACACGTTCTCGTTCGGCCAGGACTAACACCACCACAACAAATTCCGTTTCTCTCATGGACACCACTAACGAATCCTCCGGGTCAAGACGTGATCGCCGTGGCAAGAATTTGGAAAGGGACAATTCGGACAAAGGGAAGGAGAAAGAACATGATGTTGGGATTAGGGATGTAGAAAGAGAGCGAGCCTTGGCGTTGAACATGGAGGGTGAAGGTGTTGGGGACGACGATGATAATTATAGTGACAGTGGTGTGCATCGGAATTTGACGTCTGCTAGTAGTGCCCTTCAAGGGCTTCTTCGGAAACTTGGTGCTGGTTTGGATGATCTGCTTCCTGCCACGGCTATGAGTGGTTCTGCGTCCTCTTCTCATCAGAGTGGTAGACTCAAGAAAATTCTGGGTGGATTGCGTGCTGACGGAGAAGAAGGTCGTCAGCTCGAGGCATTGTCGCAGCTTTGTGACATGCTTTCCATTGGAACTGAAGAATCCCTTGGTACATTTTCCGTTGACTCGTTTGTTCCTGTGTTAGTGGGGTTGCTTAATCATGAGAGCAACCCCGATGTTATGCTACTTGCGGCCAGGGCGCTTACCCATTTATGCGACGTTCTTCCCTCATCTTGTGCTGCTGTTGTGCATTACGGGGCAGTGTCTATATTCTGTGCGAGACTGCTTACGATAGAGTATATGGATTTGGCTGAGCAGTCTCTTCAAGCGCTAAAGAAGATTTCTCAGGAGCACCCAACTGCCTGTCTTCGAGCTGGAGCTCTGATGGCTGTACTTTCTTACTTGGACTTCTTCTCAACAGGAGTTCAGCGAGTGGCATTGTCTACTGCTGCAAATATGTGCAAAAAGCTTCCTCCTGATGCAGCTGACTTTGTAATGGAAGCTGTTCCTCTTTTGACAAACCTTCTACAGTACCATGACTCCAAGGCAAGGCTATACTTTTCTGAAGCATTTGCCTCATCTCCAGACAAATTAGATGAATTATGCAATCATGGACTGGTAACACAAGCCGCCTCTCTCATTTCTAATAGCAGTTCTGGAGGTGGTCAGGCTTCTCTCAGCACTCCAACATATACTGGTCTGATCCGCCTTCTTTCCACATGTGCCAGTGGATCCCCTCTTGGAGCCAAAACATTGCTTCTCCTTGGAATTAGTGGCATTCTAAAAGATATACTATCCGGTTCTGGTGTTTCTTCTATCACCTCTTTTTCACCAGCATTAAGTAGGCCAGCAGATCAGATATTTGAGATTGTGAATCTGGCAAATGAACTTCTGCCTCCATTGCCACATGGAACCATTTCTCTTCCTGTCAGCTCCAACTTGTTTGTGAAAGGGTATTTTGTGAAAAAATGTCCTTCTGGCAGTTCCAGACAAGAAGACACCACCAACGGAAATGTTCATGAGATATCAGCTCGTGAGAAGTTATTAAATGATCAGCCTGAGTTACTTCAGCAATTTGGGATGGATCTCCTCCCAGTTTTAATGCAGATATATGGTGCCAGTGTCAATGGTCCTGTTCGCCACAAATGTCTTTCTGTCATTGGAAAATTGATGTATTTCAGCACAGCTGAGATGATCCAGTCTTTGTTGAGTGTAACAAATATATCAAGTTTCTTAGCTGGTGTGTTAGCATGGAAAGATCCGCATGTTTTGGTGCCTGCCTTGCAGATTGCAGAAATTCTTATGGAAAAGCTTCCTGGAACATTCTCTAAGATGTTTGTCAGAGAAGGTGTGGTCCATGCGGTTGACCAACTTATTTTGGCTGGAAATTCAACCAATGTATCTATTCAAGCATCTGCTGAGAAGGATAGTGATTCTGTATCTGGAACTCATTCTCAGCCCAGACACTATCGCCTGCGTAGTGGTAACTCAAACCCCGATGCAAACTATTTGGATGATTTGATGAAGAGTCCAGTTCCGGTAAATGTTGGTTTGCCAACAAGTTCCGTTGAAACTCCAACAACTGGTTCCAGTATTCGGGAGTCTATTAGCTCAGTTGCTAGAGGTTTTAAAGACAAGTATTTCCCTTCTGATCCTGGGTCTATCGAAGTGGGTGTTAGTGATGATCTTTTGCATTTGAAAAATCTCTGCACAAAGCTGAACACTTGTGTTGATGATCAAAAAACTAAGGCAAAGGGAAAAGTTAAAGCTTCTGGACCTGGTCTCAACGAAAATTCTACTAACACAGAAGAATATTTAATTGGGGTGATATCTGACATGTTAAAGGAACTTGGCAAAGGTGATGGTGTATCTACTTTTGAATTTATTGGTAGTGGTGTTGTTGAAGCCTTGTTGAGTTATTTATCTTGTGGGTATTTTGCAAAAGATCGAATGTCAGAAACCAGTCTCCCCAGACTTCGTGAACAGGCACTTGCAAGGTTCAAGTCATTTGTTGCTATTGCACTACCTTTGAGCATTGATAATGGGGATGTTGCTCCTATGACTGTCTTGGTTCAGAAGCTTCAAAATGCGTTGTCTTCCTTGGAACGCTTCCCTGTAATGCTGAGTAATTCTTCTCGTTCATCTAGTGGGAGTGCACGTCTCTCCAGTGGACTAAGTGCATTATCTCAGCCCATAAAGCTGCGTCTCTGTCGAGCACAGGGTGAAAAGTCACTTAAGGATTATTCTTCCAATGTGGTACTGATTGATCCATTAGCGAGTTTAGCAGCCATTGAGGAATTTCTGTGGACTCGTGTCCAGCGCAGTGAATCTGGTCAAAAGTCTACTGTACCCTGTGACAATTCTGAATCTGGAACAGCTCCTGCAGGGGCAGGTGTTTCATCTCCTTCCTCTTATACTCCCACCACTACCCGTAAACACGCAGCTATGTACAGATCATCTTTTAGTATGGAAGATACACCTACAAAAAAAACATCTCAAGATAAAAGCACAAGTTCGTCTAAGAGCAAGGGTAAAGCTGTATTAAAGGCTGCACAGGAGGAAGCAAGAGGACCTCAGACCCGAAATCGCAGAAGAGCAGCTCTAGATAAAAATGCTCAAATGAAACCTGTAAATGGCGAATCAACTTCTGAGGATGAAGAATTGGATATATCTCCTGTTGAAATAGATGAGGCTTTGGTGATTGAAGATGATGATATTTCTGATGATGAGGATGAAGACCATGAAGATGTGTTGAGGGATGATTCTCTTCCTGTCTGCTTGCCCGACAAAGTACATGATGTGAAATTGGGTGACTCAGCTGAGGAGAGTACTGTTCCTACAGCAACAAGCGACAGCCAGACTATCGCAGCCTCAGGTTCTAGCAGCAAAGCTGTGACAGCCAGGGGATCCGACTCTGCTGATTTTAGGAGTGGGTATTCATCTAGCTCAAGGGGTGCAATGTCATTTGCTGCTGCTGCTATGGCTGGACTAGGATATGCTAATAGCAGAGGTTTCAGGGGTGGCAGAGATAGGCATGGGCGCCTGTTGTTTGGTACTTCTAATGATCCTCCAAAGTTAATTTTTACTGCTGCTGGGAAGCAGCTTAATAGGAATTTGACTATATACCAGGCAATTCAAAAACAGCTTGTGCTAGATGAAGATGATGATGACAGATTTGCTGGCAGTGACTATGTATCCAGTGATGGAAGCAGTCTGTGGGGTGATATTTACACCATCACTTATCAAAGAGCAGAAAACCAGACAGATAAGGCATCTACTGGAGGATCAAGTTCAAATACTTCAAAACCTGCCAAATCTTGCTCTGCCTCAAATTCCAGCCCAGAAGCTAAGTTGCATCAGACCTCTGTTTTAGACAGTATATTGAATGGAGAATTGCCGTGTGATCTAGAGAAATCTAACCCCACCTACAATATTTTGGCACTCCTGCGTGTGTTGGAGTGTTTGAACCAGCTTGCTCCTCGTTTGAGGGCTCAAATGGTTTCTGATAGCTTTGCTGAGGGTAAAATCTCTAATTTTGATCAGCTAGTTGTTACAACTGATACTAGGGTTGTTCCGGAGGAATTCATTAGTGGTAAGCTTACTCCAAAGTTGGCTAGGCAAATACAAGATGCCCTAGCACTTTGCAGTGGTAGTCTTCCCTTATGGTGTTATCAGTTGACTAAAGCATGTCCTTTCTTGTTTCCTTTTGAGACTCGACGACAGTACTTCTATTCTACTGCATTTGGGTTATCTCGAGCATTGTATCGACTTCAGCAGCAGCAAGGTGCTGATGGTCATGGATCGACAACTGAGAGAGAGATTAGAGTTGGGAGATTACAGCGCCAAAAAGTTCGTGTCTCTCGAAACCGTGTCTTGGATTCTGCTGCAAAAGTTATGGAGATGTATTCTAGCCAAAAAGCGGTACTTGAAGTAGAATATTTTGGTGAAGTTGGCACTGGCCTGGGCCCAACCCTGGAGTTTTATACAATTCTAAGTCATGATTTACAAAAGGTTGGACTGCAAATGTGGAGATCCCATTCTTCAAATAAACATGAAATGGAAGTTGACGGGGATGAAAAGAGAGAGCATAGTGTAGGCTCTGGGCCTGATTTGGCTGGAGATAAAGAACTTGTTCTAGCTCCTATGGGTTTGTTTCCTCGGCCATGGCCTACAAATTCTGATGCATCAGAGGGTAGTCCGTTTGCAAAAGTCATTGAGTATTTTCGGCTGCTGGGTCGTGTTATGGCGAAAGCTCTTCAAGATGGACGACTATTGGATCTGCCATTGTCAGTGGCATTCTATAAGCTTGTTCTTGGTCAAGATCTTGATTTACATGACATTCTGTTCATCGATCCTGAGCTTGGGAAGACTTTGCAAGAGTTAAAAGCCCTTGTTCGTCGGAAACATTATGTAGAATCTGTTGGTGGTGGCTGTACTAATACCCTTTTTAACTTACATTTTCATGCTGCGCCAGTTGAAGATCTGTGCTTAGATTTTACACTTCCTGGTTTTCCTGAGTACACCTTGAAACCTGGAGATGAAACTGTCGATATCAACAATTTGGAGGAGTACATATCCTTGGTGGTTGATGCAACAGTCAAGACTGGAATCATACGGCAAATAGAGGCATTTAAAGCAGGGTTTAATCAGGTTTTTGACATCTCATCTTTACAAATTTTTACTCCTCAAGAACTAGACTACTTGCTTTGTGGCCGGAGGGAGTTGTGGGAGGCTGAGACACTTGCTGATCATATAAAATTTGACCATGGGTACAATGCAAAGAGCCCTCCAATTGTTAATTTACTTGAAATTATGGGGGAATTCACCCCGGAGCAGCAGCGCGCCTTCTGTCAATTTGTTACTGGTGCACCTAGGCTGCCACCTGGTGGGCTGGCAGTTCTAAATCCAAAGCTAACGATTGTGAGGAAGCTTTCGTCAACTGCAGTTAATACTTCATCAAACGGGAATGGACCTTCAGAATCCGCGGACGATGACTTGCCTAGTGTGATGACATGCGCTAATTACCTGAAACTTCCTCCTTACTCTACCAAGATGGGTCAGGGTTTAATTGATTCTATTGTTGAGTCTCAGTTAAGTCTTGGTTGGGATTCAGGTTCCTCCTCGCTTTCCGTGCTCAATGCCAATTGCAAGGTTGTGGTGTAA 5676 0.4433 METRSRKRAEASSAAPSSSSTSRSAKRSRLSSSSSSIPNTPTVNTRSRSARTNTTTTNSVSLMDTTNESSGSRRDRRGKNLERDNSDKGKEKEHDVGIRDVERERALALNMEGEGVGDDDDNYSDSGVHRNLTSASSALQGLLRKLGAGLDDLLPATAMSGSASSSHQSGRLKKILGGLRADGEEGRQLEALSQLCDMLSIGTEESLGTFSVDSFVPVLVGLLNHESNPDVMLLAARALTHLCDVLPSSCAAVVHYGAVSIFCARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPPDAADFVMEAVPLLTNLLQYHDSKARLYFSEAFASSPDKLDELCNHGLVTQAASLISNSSSGGGQASLSTPTYTGLIRLLSTCASGSPLGAKTLLLLGISGILKDILSGSGVSSITSFSPALSRPADQIFEIVNLANELLPPLPHGTISLPVSSNLFVKGYFVKKCPSGSSRQEDTTNGNVHEISAREKLLNDQPELLQQFGMDLLPVLMQIYGASVNGPVRHKCLSVIGKLMYFSTAEMIQSLLSVTNISSFLAGVLAWKDPHVLVPALQIAEILMEKLPGTFSKMFVREGVVHAVDQLILAGNSTNVSIQASAEKDSDSVSGTHSQPRHYRLRSGNSNPDANYLDDLMKSPVPVNVGLPTSSVETPTTGSSIRESISSVARGFKDKYFPSDPGSIEVGVSDDLLHLKNLCTKLNTCVDDQKTKAKGKVKASGPGLNENSTNTEEYLIGVISDMLKELGKGDGVSTFEFIGSGVVEALLSYLSCGYFAKDRMSETSLPRLREQALARFKSFVAIALPLSIDNGDVAPMTVLVQKLQNALSSLERFPVMLSNSSRSSSGSARLSSGLSALSQPIKLRLCRAQGEKSLKDYSSNVVLIDPLASLAAIEEFLWTRVQRSESGQKSTVPCDNSESGTAPAGAGVSSPSSYTPTTTRKHAAMYRSSFSMEDTPTKKTSQDKSTSSSKSKGKAVLKAAQEEARGPQTRNRRRAALDKNAQMKPVNGESTSEDEELDISPVEIDEALVIEDDDISDDEDEDHEDVLRDDSLPVCLPDKVHDVKLGDSAEESTVPTATSDSQTIAASGSSSKAVTARGSDSADFRSGYSSSSRGAMSFAAAAMAGLGYANSRGFRGGRDRHGRLLFGTSNDPPKLIFTAAGKQLNRNLTIYQAIQKQLVLDEDDDDRFAGSDYVSSDGSSLWGDIYTITYQRAENQTDKASTGGSSSNTSKPAKSCSASNSSPEAKLHQTSVLDSILNGELPCDLEKSNPTYNILALLRVLECLNQLAPRLRAQMVSDSFAEGKISNFDQLVVTTDTRVVPEEFISGKLTPKLARQIQDALALCSGSLPLWCYQLTKACPFLFPFETRRQYFYSTAFGLSRALYRLQQQQGADGHGSTTEREIRVGRLQRQKVRVSRNRVLDSAAKVMEMYSSQKAVLEVEYFGEVGTGLGPTLEFYTILSHDLQKVGLQMWRSHSSNKHEMEVDGDEKREHSVGSGPDLAGDKELVLAPMGLFPRPWPTNSDASEGSPFAKVIEYFRLLGRVMAKALQDGRLLDLPLSVAFYKLVLGQDLDLHDILFIDPELGKTLQELKALVRRKHYVESVGGGCTNTLFNLHFHAAPVEDLCLDFTLPGFPEYTLKPGDETVDINNLEEYISLVVDATVKTGIIRQIEAFKAGFNQVFDISSLQIFTPQELDYLLCGRRELWEAETLADHIKFDHGYNAKSPPIVNLLEIMGEFTPEQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKLSSTAVNTSSNGNGPSESADDDLPSVMTCANYLKLPPYSTKMGQGLIDSIVESQLSLGWDSGSSSLSVLNANCKVVV 1891
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03726 1891 SUPERFAMILY ARM repeat 171 641 IPR016024 -
Vimu10g03726 1891 CDD HECTc 1453 1855 IPR000569 GO:0004842
Vimu10g03726 1891 MobiDBLite consensus disorder prediction 946 1063 - -
Vimu10g03726 1891 Gene3D Hect, E3 ligase catalytic domains 1394 1637 - -
Vimu10g03726 1891 ProSiteProfiles HECT domain profile. 1576 1855 IPR000569 GO:0004842
Vimu10g03726 1891 MobiDBLite consensus disorder prediction 69 102 - -
Vimu10g03726 1891 MobiDBLite consensus disorder prediction 642 670 - -
Vimu10g03726 1891 Gene3D Hect, E3 ligase catalytic domain 1747 1868 - -
Vimu10g03726 1891 SMART hect_3 1464 1881 IPR000569 GO:0004842
Vimu10g03726 1891 MobiDBLite consensus disorder prediction 10 68 - -
Vimu10g03726 1891 MobiDBLite consensus disorder prediction 1108 1151 - -
Vimu10g03726 1891 Gene3D - 161 472 IPR011989 -
Vimu10g03726 1891 FunFam E3 ubiquitin-protein ligase UPL3 1394 1637 - -
Vimu10g03726 1891 MobiDBLite consensus disorder prediction 1 102 - -
Vimu10g03726 1891 SUPERFAMILY Hect, E3 ligase catalytic domain 1446 1855 IPR035983 GO:0004842
Vimu10g03726 1891 PANTHER E3 UBIQUITIN-PROTEIN LIGASE TRIP12 11 1860 IPR045322 GO:0006511|GO:0061630
Vimu10g03726 1891 MobiDBLite consensus disorder prediction 1113 1151 - -
Vimu10g03726 1891 Pfam HECT-domain (ubiquitin-transferase) 1502 1855 IPR000569 GO:0004842
Vimu10g03726 1891 FunFam HECT ubiquitin protein ligase family protein KAK 165 472 - -
Vimu10g03726 1891 MobiDBLite consensus disorder prediction 946 1016 - -
Vimu10g03726 1891 MobiDBLite consensus disorder prediction 1027 1041 - -
Vimu10g03726 1891 MobiDBLite consensus disorder prediction 1258 1287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03726 Vimu-Chr10 46137258 46146740 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03726 K10590 - gmx:100791450 2964.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03726 10 46137258 46146740 Vimu10g03726 10 46137258 46146740 ECH