Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03724 ATGGGTTTCTTCGGCACCATATTTAGTTTTTTTGGCTTTGGATTTGGGATTTCCATGGGTCTTGCTATCGGTTATTATCTCTTTATTTATGTTCAACCCAGTGATGTGAAGGATCCTGAAATCAAACCATTGGCAGAGGAAGATTCAGAAACTATAGACCGAATGATTCCTGAAATTCCACTTTGGGTAAAGAATCCAGACTTCGATCGGGTTGATTGGCTTAACAAATTGATTGAATATATGTGGCCATATCTAAATAAGGCTATCTGCAAAACAGCAGAGACCATTGCAAAGCCTATAATTGAAGAGCAAATACCACAATATAAAATTGATTCCGTTGAATTCGAAGAACTAACACTAGGTTCCTTGCCGCCAACTTTTCAAGGAATGAAAGTTTACGAGACTGAAGAGAAAGAATTAATAATGGAGCTTTCTGTAAAATGGGCAGCAAATCCTAATATCATTGTTGCAGTTAAGAAATTTGGGTTGAAAGCAACGGTCCAGGTGATGGATCTGCATGTTTTTGCTATACCGCGTATTACTTTGAAACCTTTGGTTCCAAGTTTTCCATGCTTTGCCAATATTTTCGTGTCTCTCATGGAAAAGCCATATGTTGACTTTGGGCTGAAGCTTGTAGGGGCTGATCTTATGTCTATTCCTGGACTTTACAAGTTCGTTCAGGAGATTATCAAAGATCAAGTTGCAAATATGTATCTATGGCCCAAAACTTTAGATATTCAAGTTATAGATCCATCGAAAGCACAGAAAAAGCCTGTTGGAATTTTAAATACAAAGGTTATAAGAGCAATGAAGTTAAAGAAGAAAGATCTTCTGGGTGCATCTGACCCTTATGTGCAGTTAACACTTACCGAAGACACTTTGTCATCGAAAAAAACTACTGTGAAGCATAAGAACTTGAATCCTGAATGGAACGAAGAATTTACTGATGAACCTAAAACGTTTACTCTTGAACTTTTGAAAAACTTGAATCCAAAGGATGCCCAGAATGAGAAGTCTCGGGGGCAAATTGTTCTAGAATTGACATATAAACCATTCAGGAACGAAGACTTGGCGAAAAGTTTTAAGGAGCCACACCCTACAAAGAGTCCTCCCGAAGGCACTCCTCCTGGTGGAGGTTTACTTGTAGTTATAATCCATGAAGCTCAAGATGTTGAAGGAAAGTACCATACCAATCCACACGTACGCCTTATTTTCAGAGGAGAAGAAAGAAGAACTAAGATAATTAAAAAAAATAGAGATCCAAGGTGGGAAGAAGAGTTCCAATTTTTGGTGGAAGAGGCTCCCACTAATGATAAATTACATGTGGAAGTTGTTAGCACTTCCTCACGAAGCCTTCTACGTCAAAAGGAATCTTTGGGTTATGCTGACATTAGTCTTGCGGATGTTGTTGCGAATAATAGAATCAACGAAAGGCACCATCTTATAGACTCCAAGAATGGTCGTATCCAAATAGAACTACAGTGGAGAGCTTCACAAGCTAATTAA 1506 0.3838 MGFFGTIFSFFGFGFGISMGLAIGYYLFIYVQPSDVKDPEIKPLAEEDSETIDRMIPEIPLWVKNPDFDRVDWLNKLIEYMWPYLNKAICKTAETIAKPIIEEQIPQYKIDSVEFEELTLGSLPPTFQGMKVYETEEKELIMELSVKWAANPNIIVAVKKFGLKATVQVMDLHVFAIPRITLKPLVPSFPCFANIFVSLMEKPYVDFGLKLVGADLMSIPGLYKFVQEIIKDQVANMYLWPKTLDIQVIDPSKAQKKPVGILNTKVIRAMKLKKKDLLGASDPYVQLTLTEDTLSSKKTTVKHKNLNPEWNEEFTDEPKTFTLELLKNLNPKDAQNEKSRGQIVLELTYKPFRNEDLAKSFKEPHPTKSPPEGTPPGGGLLVVIIHEAQDVEGKYHTNPHVRLIFRGEERRTKIIKKNRDPRWEEEFQFLVEEAPTNDKLHVEVVSTSSRSLLRQKESLGYADISLADVVANNRINERHHLIDSKNGRIQIELQWRASQAN 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03724 501 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 379 496 IPR035892 -
Vimu10g03724 501 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 256 315 IPR035892 -
Vimu10g03724 501 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 8 314 IPR045050 GO:0008289
Vimu10g03724 501 CDD SMP_SYT 60 248 - -
Vimu10g03724 501 SMART C2_3c 380 478 IPR000008 -
Vimu10g03724 501 SMART C2_3c 261 359 IPR000008 -
Vimu10g03724 501 FunFam Extended synaptotagmin-2 380 497 - -
Vimu10g03724 501 Pfam C2 domain 380 478 IPR000008 -
Vimu10g03724 501 Pfam C2 domain 260 315 IPR000008 -
Vimu10g03724 501 Gene3D C2 domain 380 499 IPR035892 -
Vimu10g03724 501 ProSiteProfiles C2 domain profile. 240 359 IPR000008 -
Vimu10g03724 501 ProSiteProfiles C2 domain profile. 360 479 IPR000008 -
Vimu10g03724 501 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 67 249 IPR031468 GO:0008289
Vimu10g03724 501 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 67 246 IPR039010 -
Vimu10g03724 501 CDD C2 381 482 - -
Vimu10g03724 501 Gene3D C2 domain 246 319 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03724 Vimu-Chr10 46130466 46135471 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03724 262 466 Lipid Metabolism Gene Families AT1G51570 24.419 1.16e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03724 - - gmx:100780850 845.499
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03724 10 46130466 46135471 Vimu10g03724 10 46130466 46135471 ECH