Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03716 ATGATAAGGGCTACTATGGAAACAGAGAAAGAGACGTATGATTGCATAGGAACAGTTACAGCCAAGCTTGGATGCTGGTCTTTTCTGAAGGGTGGTTTTGTTCTCAACTGGCCTTCAAATCTATCCATTATCTTCTTCCAGAACGCGGATGGTAAAGACATCAATATAGAAGTTGCTAGCCCATCACTCCAGCCATTTTCTAAGCAACAATGGGAAATCAATCAACAGTATACGATCAATACTAAAAGAAAGCGTGCCGTCACTATTCATGTATCTGATAGCAACGGTAGAAGATTGCAAGGAGCTTCCATCCGTATAGAGCAAATCTCAAAAGAATTCCTTTTTGGATCTGCCATAGCACACACTATTCTTGGCAATGTACCCTATCAGAATTGGTTTGTGAAACGATTCAACGCGGCAGTCTTTGAAAATGAGCTCAAATGGTACGCCACAGAACCTGATGAAGGCAAGGTCAATTACACCATTTCAGACCAAATGCTACAATTTGTTCGAACAAAAAATATCGTAGCCAGAGGGCACAACATATTTTGGGAAGACCCTAAGTACAATCCTCCATGGGTTCTAAACCTTACTGGCCCCCAGTTACAAGCTGCAGTGAATTCCCGAATACAAAGTCTGATGAGCCAGTACAGAAATGAGTTCATACACTGGGACGTCAGCAACGAAATGCTTCATTTTGATTTCTACGAGCAAAGGCTTGGATCTGATGCAACATTGCATTTCTTTGAGACTGCACACGAATCAGACCCATTATCAACCCTGTTTATGAATGACTTTAATGTTGTGGAAACATGCAGTGACGTAAATTCCACCGTAGACGCCTATATCTCACGGATAAGAGAACTGCGACGAAATGGCATCTTCATGGATGGAATTGGCTTGGAGGGACACTTCACAATACCCAATCCTCCCCTTATCAGAGCCATACTAGACAAGTTGGCAACACTTGGACTTCCCATTTGGCTTACTGAGGTTGATATAAGCAAGACTATTGATACAGATTCACAGGGAGATTATTTGGAGCAAGTGTTGAGGGAAGGGTTCTCGCATCCTTCTGTGAATGGGATAATGCTTTGGACAGCATATCATCCAAACGGGTGCTACCAAATGTGCCTGACAGACAAAAATTTCAAGAACCTACCAGCAGGTGATGTGGTGGACAAACTTCTTCAAGAGTGGAAAACAGGTCGTGTAAATGGAGTGACAGATGTGCACGGTTCCTATAGCTTTTATGGCTTCTTAGGAGAATATACTGTTACTGTCAACTATGGCAACAGGACTACGCATTCAACATTCTCCCTCTCTCGAGGTCAAGAAACTCAACATTTCACCATTACACTCTCATCCAACTCTTAG 1377 0.4256 MIRATMETEKETYDCIGTVTAKLGCWSFLKGGFVLNWPSNLSIIFFQNADGKDINIEVASPSLQPFSKQQWEINQQYTINTKRKRAVTIHVSDSNGRRLQGASIRIEQISKEFLFGSAIAHTILGNVPYQNWFVKRFNAAVFENELKWYATEPDEGKVNYTISDQMLQFVRTKNIVARGHNIFWEDPKYNPPWVLNLTGPQLQAAVNSRIQSLMSQYRNEFIHWDVSNEMLHFDFYEQRLGSDATLHFFETAHESDPLSTLFMNDFNVVETCSDVNSTVDAYISRIRELRRNGIFMDGIGLEGHFTIPNPPLIRAILDKLATLGLPIWLTEVDISKTIDTDSQGDYLEQVLREGFSHPSVNGIMLWTAYHPNGCYQMCLTDKNFKNLPAGDVVDKLLQEWKTGRVNGVTDVHGSYSFYGFLGEYTVTVNYGNRTTHSTFSLSRGQETQHFTITLSSNS 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03716 458 PRINTS Glycosyl hydrolase family 10 signature 177 189 IPR001000 GO:0004553|GO:0005975
Vimu10g03716 458 PRINTS Glycosyl hydrolase family 10 signature 259 270 IPR001000 GO:0004553|GO:0005975
Vimu10g03716 458 PRINTS Glycosyl hydrolase family 10 signature 221 232 IPR001000 GO:0004553|GO:0005975
Vimu10g03716 458 PRINTS Glycosyl hydrolase family 10 signature 292 304 IPR001000 GO:0004553|GO:0005975
Vimu10g03716 458 SMART glyco_10 146 397 IPR001000 GO:0004553|GO:0005975
Vimu10g03716 458 SUPERFAMILY (Trans)glycosidases 98 404 IPR017853 -
Vimu10g03716 458 PANTHER GLYCOSYL HYDROLASE 4 447 IPR044846 GO:0004553|GO:0005975
Vimu10g03716 458 Gene3D Glycosidases 102 410 - -
Vimu10g03716 458 Pfam Glycosyl hydrolase family 10 109 368 IPR001000 GO:0004553|GO:0005975
Vimu10g03716 458 ProSiteProfiles Glycosyl hydrolases family 10 (GH10) domain profile. 100 396 IPR001000 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03716 Vimu-Chr10 46087936 46091162 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03716 2 454 Glycoside Hydrolase AT4G38650 67.325 0.0 660
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03716 - - vra:106762624 923.694
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03716 10 46087936 46091162 Vimu10g03716 10 46087936 46091162 ECH