Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03695 ATGGCGAGTAAGTCAGGGAGCAGCAAGCGGAAAAATGGTGCAAAGGGAGAGATTGTGGATGGTTCAAAGATTATGGAGCTGGTTGGAAATGAACAAGTTTTCAGCAACTTTGTGGACAATAAGTTTGACGAGTTGGATAAGGACAGAGATGGGAAACTCTCCATGAAGGAGCTTGAACCTGCTGTTGCTGACATCGGTGCTGGCCTTGGTTTGCCTGCTCAAGGCACTAGTCCTGATTCAGATCACATCTATTATGAGGTCTTGAATGAGTTCACCCATGGCAAGCAAGAAAAAGTAAGCAAGATGGAGTTCAAAGAAGTTCTCTCAGACATTCTTTTGGGCATGGCTGCTGGACTAAAGCGAGACCCTATTGTTATACTCCGCATGCAAGGAGAAGATCTACTTGAGTTTGTGAATGGTCCAAGTTATGAAGCAGAAATGGCATCCATTTTCTCTCAGATTGAGTCCCCTAGTGGATCACTTCGTGACCATGTAATTGAAGCTTTTGGGAGACTCACTGTTGATCATGGAATTCCTCCCACGTCAGATTCTTGGGTTTTCAACAACATTGTGGATCCAGCACTGTCTCAAGCTGGGCCTGCTTTGGACAAACCTGCTTCTCAGGAGACATTTTTGGAAGAATTTAAGAGAGTGGCATTCAGTGTGGCTGAGTTTCTTAAAGAGAAACCTGTCATTGTTGCCCACAGCGAAAACACATTTGATGGACGAGGCGTTAAGAGACTTTTATCCAACAAGTTTGAACTAGAAAGGACATTGAACTTGGCTTTAGAGAATCTGTCAAAAGATCGCAATGGAAAAATATCAAAGGACAATCTGCGGGTGGCACTAGATCTGGTGTCTCCATCTGCTGGTTTGCCTCCAGTTGGTGCAATTGAAGAGATGGATAAAGTTATCGTTGAAGCCTTTAAGATGGTGAATGCCGATGACAGAAACACGGTTACAGAAGAAGAATTCAAGAAAAGTTTAACTGAAATATTGGGGGGTATCATGTTGCAGTTAGAGGGCAATCCCATATCTGTTTCTTCAAACTCAGTCGTGCATGAGCCTTTAGGCTCATCTTCTACACTCTTGCAGCCATCTTCTAGTGAGACAGCATAG 1119 0.437 MASKSGSSKRKNGAKGEIVDGSKIMELVGNEQVFSNFVDNKFDELDKDRDGKLSMKELEPAVADIGAGLGLPAQGTSPDSDHIYYEVLNEFTHGKQEKVSKMEFKEVLSDILLGMAAGLKRDPIVILRMQGEDLLEFVNGPSYEAEMASIFSQIESPSGSLRDHVIEAFGRLTVDHGIPPTSDSWVFNNIVDPALSQAGPALDKPASQETFLEEFKRVAFSVAEFLKEKPVIVAHSENTFDGRGVKRLLSNKFELERTLNLALENLSKDRNGKISKDNLRVALDLVSPSAGLPPVGAIEEMDKVIVEAFKMVNADDRNTVTEEEFKKSLTEILGGIMLQLEGNPISVSSNSVVHEPLGSSSTLLQPSSSETA 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03695 372 Gene3D - 11 119 - -
Vimu10g03695 372 ProSiteProfiles EF-hand calcium-binding domain profile. 33 68 IPR002048 GO:0005509
Vimu10g03695 372 PANTHER CALCIUM-BINDING EF-HAND FAMILY PROTEIN-RELATED 17 127 - -
Vimu10g03695 372 SUPERFAMILY EF-hand 41 342 IPR011992 -
Vimu10g03695 372 ProSiteProfiles EF-hand calcium-binding domain profile. 254 289 IPR002048 GO:0005509
Vimu10g03695 372 SMART efh_1 37 65 IPR002048 GO:0005509
Vimu10g03695 372 SMART efh_1 258 286 IPR002048 GO:0005509
Vimu10g03695 372 SMART efh_1 304 332 IPR002048 GO:0005509
Vimu10g03695 372 Gene3D - 141 339 - -
Vimu10g03695 372 ProSitePatterns EF-hand calcium-binding domain. 46 58 IPR018247 -
Vimu10g03695 372 ProSiteProfiles EF-hand calcium-binding domain profile. 300 335 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03695 Vimu-Chr10 45974508 45977897 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03695 17 371 EF-hand Containing Proteins AT4G38810 66.574 7.28e-171 479
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03695 - - gmx:100787083 659.062
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03695 10 45974508 45977897 Vimu10g03695 10 45974508 45977897 ECH