Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03694 ATGAAGTGGGGCCCTTTATCTTGTGGCAGCATTCTCCAACTAGCACTTTGCACTCATCTTTCTCTGATCATCCTTTCTGGAAATGTATGGCTTCCCAATCTCTGCTGCAACCATCACTATATATACACAAAAACTGAAGCCTCCTTACTCCAAAATCACTACAAAATCATTGCATCATCTTCACTTCAACATCTTCTTGTATTTACTTGGCATCAGGTATCAGAGTTAATTATGGGTATTCGTCTGCCAATATTTATGGCTCTTCATGCGAACAAGATATTCAAGTGGCAGCAACATCTGCATAACAGAAACCATTCCAATTACGTTCCAAAGGGTCACATAGCAGTGTATGTGGGAGAGGCTCAAAAGAAGAGGTTCGTGGTTCCAATATCTTACTTGAACCATCCTTCGTTTCTTGATTTGCTAAACCGAGCGCAGGAAGAGTTTGGCTACAATCATCCAATGGGAGGTCTCACCATCCCTTGCAAAGAAGAGGCTTTCATCTCTCTCACCTCTCAATTACGTTCCTGA 531 0.42 MKWGPLSCGSILQLALCTHLSLIILSGNVWLPNLCCNHHYIYTKTEASLLQNHYKIIASSSLQHLLVFTWHQVSELIMGIRLPIFMALHANKIFKWQQHLHNRNHSNYVPKGHIAVYVGEAQKKRFVVPISYLNHPSFLDLLNRAQEEFGYNHPMGGLTIPCKEEAFISLTSQLRS 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03694 176 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 98 174 IPR003676 GO:0009733
Vimu10g03694 176 Pfam Auxin responsive protein 90 172 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03694 Vimu-Chr10 45969022 45969552 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03694 109 167 Calmodulin-binding Proteins AT5G20810 54.237 1.66e-14 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03694 K14488 - gmx:102663761 194.512
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03694 10 45969022 45969552 Vimu10g03694 10 45969022 45969552 ECH