LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu10g03682	ATGCCTGCCTTGGCTTGTTGCGTGGATGCTGCAGCACCTCCCGGCTATGCATTTGCCGGTGACATCTCTTTTCCGGCGCCGGTCGCCTTTGCCGACGTTCCTCTGCCTACGGCAGACGACAACACCAGCCATTGGTCGCCGTCCCTCTCCGCCGCTCTCTACAACGTCGACGGATGGGGCGGTCCCTACTTTTCCGTCAACGCAGCCGGGAACATCTCGGTGCGCTCCCACGGGTCCGCCACCCTGTCGCACCAGGAGATCGATTTGCTGAAGATTGTGAAGAAGGCCTCCGATCCCAAATCTGTAGGGGGCCTTGGCCTTCAGTTTCCCCTCATTGTCCGTTTCCCGGACGTTCTCAAGAACCGCTTGGAGTGCCTCCAGTCGGCGTTTGATTATGCAATCCAGTCCGAGGGTTACGGTTCTCATTACCAAGGAGTTTACCCAGTGAAATGCAACCAGGACCGATTTGTGGTCGAGGATATCGTCAAATTTGGTTCGCCGTTCCGGTTCGGCCTGGAGGCAGGTTCCAAGCCGGAACTCCTTCTGGCTATGAGCTGTTTGTGCAAAGGCAACCCTGACGCGTTGCTAATATGTAACGGCTTCAAAGACGCGGAGTACATTTCTCTTGCCCTGGTTGCCAACAAGCTGGCTCTCAACACCGTTATTGTTCTGGAGCAAGAGGAGGAGGTTGATTTAATCGTTGAATTGAGCAAGAAGCTTTGCATTAAGCCCGTGATTGGGTTGCGTGCGAAGCTCCGAACCAAGCATTCTGGCCATTTTGGTGCGACTTCAGGCGAGAAGGGTAAGTTTGGTCTGACCACCGCTCAGATTCTCAGGGTTGTGAAGAAGCTGGACCTTGCTGGCATGCTGGATTGTTTGCAACTGCTGCATTTTCATATCGGTTCTCAGATTCCTTCGACAGCGTTGCTTGCTGATGGCGTGGGAGAAGCCGCGCAGATCTATTGTGAACTGGTTCGGTTAGGGGCGAACATGCGGGTCATCGATATTGGAGGTGGACTGGGCATTGATTACGACGGTTCCAAGTCGTGTGACTCTGATATTTCAGTCGGGTACAGTCTGGACGAGTATGCTGCCGCGGTTGTTCGCGCGGTTCAGTGTGTGTGCGATCGAAGGTCCGTCAAGAATCCTGTTATCTGCAGCGAGAGTGGAAGGGCCATCGTGTCTCATCAGTCGGTCTTGGTTTTTGAGGCGGTTGGCACCAGCAGCACCGTGGGCGGAGCCTCCTCGGCTTTTTCCTCACCATATTTGGCGGGGGATCTGTCGGAGGACTACCGTTTTCTGTCGGAGGCGGCTTTTGGAGGGGATTATGAACGCTGTTTGGTGTACACGGAGGAGCTGAAGGAGCGATGCGTGGAGCAGTTCAAACAGGGGACGGTGTGCATGGAACAACTTGCAGCGGTGGATGGGTTGTGTGAGTTGGTGAGGAAGGCTGTTGGAGTTGGGGAACCTGTTCGAAGATACCACGTGAATCTTTCCGTTTTCACTTCCATTCCGGATGCGTGGGGCATTGAACAGGTGTTTCCCATAATCCCCATTCATCGTCTGGACGAGAAGCCTTCCGTGAGGGGTATTCTCTCGGATTTGACTTGCGACAGCGATGGGAAGATTGACAAATTCATCAACGGGGAGTCCAGCCTGCCGCTGCATGAAGTTGATGGAGGTGGTTACTATTTGGGAATGTTCTTGGGTGGGGCCTACGAGGAGGCGCTCGGTGGATTCCACAACTTGTTCGGCGGTCCCAGCGTTGTGAGGGTGTCGCAGAGCGATGGTCCTCACAGCTTCGCAGTCACGCGGGCCGTGCCGGGTCCATCATGTGGAGATGTTCTTCGAGTGATGCAGCACCAGCCCGAGCTCATGTTCGAAACTCTCAAGCACCGCGCGTACGAGTATGTCAGCCAAGACAATGCCGCGGTTCTGGCCTCTGGCCTTGCTCGCACTTTTGACAGGATGCCTTATCTGGTTCCCCTGTCTTCCTTTGAAGAAGCTGCCTTTCCCGTTTCCGATGAGGACGAGGGCGTGCAGTGGTCTTATTAG	2055	0.5494	MPALACCVDAAAPPGYAFAGDISFPAPVAFADVPLPTADDNTSHWSPSLSAALYNVDGWGGPYFSVNAAGNISVRSHGSATLSHQEIDLLKIVKKASDPKSVGGLGLQFPLIVRFPDVLKNRLECLQSAFDYAIQSEGYGSHYQGVYPVKCNQDRFVVEDIVKFGSPFRFGLEAGSKPELLLAMSCLCKGNPDALLICNGFKDAEYISLALVANKLALNTVIVLEQEEEVDLIVELSKKLCIKPVIGLRAKLRTKHSGHFGATSGEKGKFGLTTAQILRVVKKLDLAGMLDCLQLLHFHIGSQIPSTALLADGVGEAAQIYCELVRLGANMRVIDIGGGLGIDYDGSKSCDSDISVGYSLDEYAAAVVRAVQCVCDRRSVKNPVICSESGRAIVSHQSVLVFEAVGTSSTVGGASSAFSSPYLAGDLSEDYRFLSEAAFGGDYERCLVYTEELKERCVEQFKQGTVCMEQLAAVDGLCELVRKAVGVGEPVRRYHVNLSVFTSIPDAWGIEQVFPIIPIHRLDEKPSVRGILSDLTCDSDGKIDKFINGESSLPLHEVDGGGYYLGMFLGGAYEEALGGFHNLFGGPSVVRVSQSDGPHSFAVTRAVPGPSCGDVLRVMQHQPELMFETLKHRAYEYVSQDNAAVLASGLARTFDRMPYLVPLSSFEEAAFPVSDEDEGVQWSY	684

Annotation information

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Vimu10g03682	684	PRINTS	Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature	290	303	IPR000183	GO:0003824
Vimu10g03682	684	PRINTS	Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature	147	165	IPR000183	GO:0003824
Vimu10g03682	684	PRINTS	Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature	385	404	IPR000183	GO:0003824
Vimu10g03682	684	PRINTS	Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature	171	183	IPR000183	GO:0003824
Vimu10g03682	684	PRINTS	Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature	571	584	IPR000183	GO:0003824
Vimu10g03682	684	CDD	PLPDE_III_ADC	106	592	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Vimu10g03682	684	Gene3D	Lyase, Ornithine Decarboxylase; Chain A, domain 1	54	594	IPR009006	GO:0003824
Vimu10g03682	684	ProSitePatterns	Orn/DAP/Arg decarboxylases family 2 signature 2.	328	341	IPR022657	-
Vimu10g03682	684	PANTHER	ARGININE DECARBOXYLASE	1	661	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Vimu10g03682	684	FunFam	Biosynthetic arginine decarboxylase	116	397	-	-
Vimu10g03682	684	Gene3D	Alanine racemase	116	397	IPR029066	-
Vimu10g03682	684	SUPERFAMILY	PLP-binding barrel	115	397	IPR029066	-
Vimu10g03682	684	ProSitePatterns	Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site.	147	165	IPR022653	-
Vimu10g03682	684	Pfam	Pyridoxal-dependent decarboxylase, pyridoxal binding domain	142	395	IPR022644	GO:0003824
Vimu10g03682	684	PRINTS	Arginine decarboxylase signature	571	592	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Vimu10g03682	684	PRINTS	Arginine decarboxylase signature	197	212	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Vimu10g03682	684	PRINTS	Arginine decarboxylase signature	522	547	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Vimu10g03682	684	PRINTS	Arginine decarboxylase signature	223	244	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Vimu10g03682	684	PRINTS	Arginine decarboxylase signature	247	269	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Vimu10g03682	684	PRINTS	Arginine decarboxylase signature	115	130	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Vimu10g03682	684	PRINTS	Arginine decarboxylase signature	497	518	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Vimu10g03682	684	PRINTS	Arginine decarboxylase signature	139	153	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Vimu10g03682	684	PRINTS	Arginine decarboxylase signature	375	392	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Vimu10g03682	684	SUPERFAMILY	Alanine racemase C-terminal domain-like	487	595	IPR009006	GO:0003824
Vimu10g03682	684	Gene3D	-	414	490	-	-
Vimu10g03682	684	PIRSF	ARGDC	33	660	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Vimu10g03682	684	NCBIfam	arginine decarboxylase	45	660	IPR002985	GO:0006527\|GO:0008295\|GO:0008792

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu10g03682	Vimu-Chr10	45863556	45865610	Dispersed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu10g03682	K01583		-	gmx:548071	1191.79

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vimu10g03682	10	45863556	45865610	Vimu10g03682	10	45863556	45865610	ECH