Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03680 ATGATGCAGTTTTTGGTATATTTGCAGTTTATTGACGGATATCACAGGACTTCATCATTTGAGCAGACATATCGATGTTACTCTGCCTCATTTATTGAAAAGCCCGAAATCGAAAATGGCGATAAAATTATAATGCCTGCTTCAGCCCTTGATCATCTAGCATTTTTACGCATCGATTATCCTATGATGTTTGAACTCACTAATGGTGCTTCTGAGCGGGTTTCTCATTGTGGAGTTCTGGACTTAGAGACGACTTTGAGGAAATTTTCATGCTTAACGACTGGAGATACTATCATGGTGACATACAACAACAAAAGGTATTACTTAGATATTATTGAAACAAAGCCTGCTAAAGCTATAAGCATCATCGAGACAGACTGTGAGGTGGACTTTGCTCCTTCCTTGGATTACAAAGATCTTGGAAAGCCTAACATTGCAGACAAAACACAAAACAAAGGTAAGTTCAATCCATTTTTTGGGACTGCGAGACGTTTGGATGGAAAACCTATTCCTGCTGTTTATTCATCAGGGCATAAAAACAAACATGTTCCAAACGTGAATGCACTGTCTTCCACAACATCTCCATCTGGGGGAAAGCTAGTATTTGGATCAAACTTTTACCGTACAAAAGAAACAGGAAAGGAAGAGATGGAGCCAAAACGAGAACAAACCCAGCAAATGCAACCAAAATTTCAACCTTTCATAGGGAAGAAGTATTCCCTGAGGGGTTGA 732 0.3934 MMQFLVYLQFIDGYHRTSSFEQTYRCYSASFIEKPEIENGDKIIMPASALDHLAFLRIDYPMMFELTNGASERVSHCGVLDLETTLRKFSCLTTGDTIMVTYNNKRYYLDIIETKPAKAISIIETDCEVDFAPSLDYKDLGKPNIADKTQNKGKFNPFFGTARRLDGKPIPAVYSSGHKNKHVPNVNALSSTTSPSGGKLVFGSNFYRTKETGKEEMEPKREQTQQMQPKFQPFIGKKYSLRG 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03680 243 Gene3D - 84 132 - -
Vimu10g03680 243 Gene3D - 12 83 IPR042299 -
Vimu10g03680 243 Pfam Ubiquitin fusion degradation protein UFD1 20 81 IPR004854 GO:0006511
Vimu10g03680 243 Pfam Ubiquitin fusion degradation protein UFD1 82 133 IPR004854 GO:0006511
Vimu10g03680 243 PANTHER UBIQUITIN FUSION DEGRADATON PROTEIN 1 16 80 IPR004854 GO:0006511
Vimu10g03680 243 MobiDBLite consensus disorder prediction 211 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03680 Vimu-Chr10 45849826 45854065 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03680 K14016 - gmx:100795133 235.728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03680 10 45849826 45854065 Vimu10g03680 10 45849826 45854065 ECH