Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03673 ATGGCACCTTCCAATCTTTTTCCGATTCTTCTTCTCCTTCTTCTCTCTCTCTCCGTCACTGCTCACGATTATCAGCAGGCATTGTCCAAGGCAATCCTCTTCTTCGAGGGCCAACGCTCCGGATTCTTGCCGCAGGACCAGAGAATGCAGTGGCGCGCCAATTCCGGTCTCGGCGACGGGTGGACCTACAACATCGACCTCACCGGCGGCTACTACGACGCCGGCGACAACGTCAAGTTCGGCTTTCCCATGGCATTCACCACCACAATGCTCTCCTGGAGTGTCATCGAATTCGGAGACATGATGCCTCCCAACGAGCACAGAAACGCGCTCGTGGCAATCCGTTGGGCTACCGATTATTTGCTCAAAACCGTTTCTCAGCCCAACCGCATTTTCGTTCAGGTAGGCGATCCAATCTCTGACCATAACTGTTGGGAAAGACCAGAGGACATGGACACAAGAAGGACTGTGTATGCCGTTGATGCACCGAATCCAGCTTCAGATGTGGCTGGCGAAACTGCTGCGGCACTAGCTGCTTCGTCCATGGCTTTTCGTTCATCGGATCCTGCTTATTCAGAGACTTTGTTACGAAATGCTGTCAAGGCATTTCAACTTGCAGATAACTATAGGGGTGCCTACAGTGATAATGTTGATGTGAGGGATGGTGTCTGCCCATATTATTGTGACTTCGATGGATATCAGGACGAATTGTTATGGGGAGCTGCATGGCTAAGAAGGGCCACTCAAGACGACAATTTCCTGAACTACATTCAAAGCAATGGCAAAACGCTGGGTGCTGAAGAAAACATAAATGAGTTCGGTTGGGACAACAAGCATGCTGGCCTTAATGTTCTTGTCTCTAAGGAAGTTCTAGAAGGAAATGTACTATCTCTTGATTCGTACAAGACTTCAGCGGAGAGCTTTCTGTGCACGCTGATACCCGAAACTTCAAGTTCACATATAGAGTACACTCCTGGTGGACTCATATACAGGCCAGGGGGTAGCAACTTGCAGCATGCAACTTCAATTGCTTTCCTCGAATTGGTTTACGCTAATTACCTATCACGCACTTCACAAACCATCAATTGTGGGAACATCTATGTTAATGCACAAACACTTCGCCAGCTTGCTAAGAAGCAAGTTGATTACATTTTGGGCGATAACCCAATGGGTATGTCGTACATGGTTGGGTATGGCAACAAGTATCCACAGCGTATACACCATCGTGGCTCCTCTTTACCCTCCATCAAGGACCATCCTCAAGTCATTGCCTGCAAAGAAGGTTCAATCTACTTCAACTCGTCCAATCCTAATCCTAATGTTCTGGTGGGAGCCATTGTGGGAGGACCAGGAGAAGATGATCTATATGGGGATGATAGGGCTGATTTTAGGAAGTCCGAACCAACCACATATATTAATGCACCATTTGTTGGGATTTTAGCATACTTTGTTGCTAACCCCAATCCTTGA 1470 0.4776 MAPSNLFPILLLLLLSLSVTAHDYQQALSKAILFFEGQRSGFLPQDQRMQWRANSGLGDGWTYNIDLTGGYYDAGDNVKFGFPMAFTTTMLSWSVIEFGDMMPPNEHRNALVAIRWATDYLLKTVSQPNRIFVQVGDPISDHNCWERPEDMDTRRTVYAVDAPNPASDVAGETAAALAASSMAFRSSDPAYSETLLRNAVKAFQLADNYRGAYSDNVDVRDGVCPYYCDFDGYQDELLWGAAWLRRATQDDNFLNYIQSNGKTLGAEENINEFGWDNKHAGLNVLVSKEVLEGNVLSLDSYKTSAESFLCTLIPETSSSHIEYTPGGLIYRPGGSNLQHATSIAFLELVYANYLSRTSQTINCGNIYVNAQTLRQLAKKQVDYILGDNPMGMSYMVGYGNKYPQRIHHRGSSLPSIKDHPQVIACKEGSIYFNSSNPNPNVLVGAIVGGPGEDDLYGDDRADFRKSEPTTYINAPFVGILAYFVANPNP 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03673 489 SUPERFAMILY Six-hairpin glycosidases 20 486 IPR008928 GO:0005975
Vimu10g03673 489 FunFam Endoglucanase 20 488 - -
Vimu10g03673 489 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 3. 456 474 IPR033126 -
Vimu10g03673 489 Pfam Glycosyl hydrolase family 9 24 480 IPR001701 GO:0004553|GO:0005975
Vimu10g03673 489 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 383 409 IPR018221 -
Vimu10g03673 489 Gene3D - 20 487 IPR012341 GO:0005975
Vimu10g03673 489 PANTHER ENDO-1,4-BETA-GLUCANASE 12 484 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03673 Vimu-Chr10 45820841 45824270 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03673 4 486 Glycoside Hydrolase AT1G70710 59.959 0.0 612
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03673 K01179 - gmx:100799911 927.546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03673 10 45820841 45824270 Vimu10g03673 10 45820841 45824270 ECH