Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03662 ATGGTTACTGATGAGGTGGAACTTCAACAACATCAGAAACTTGAGAAACTTTACATATCAACACGGGCTGGAAAGCATTATCAAAGGGATATTGTCCGTGGTGTGGAAGGTTATATTGTAACTGGATCCAAGCAAGTTGAAATAGGAACAAAGTTATCAGAAGATAGCAGGAAATATGGTGCAGATAATACATGTACCAGTGGTAGTACGTTATCAAGAGCAGCGCTAAACTATGCACGTGCCCGTGCACAAATGGAGAAGGAGCGTGGGAGCTTACTAAAAGCACTTGGAACACAGGTTGCGGAGCCCTTAAGAGCAATGGTGATGGGAGCACCATTGGAAGATGCCCGACATCTTGCTCAACGATATGACAGAATGAGGCAGGAAGCTGAAGCCCAGGCTATTGAAGTTTCCAAACGCCAGGCAAGAGTAAGAGAAACACCAGGCAATACTGAGAATGCTATGAAACTGGAAGCAGCTGAAGCAAAGCTCCAAGACCTAAAGACAAACATGGCCATATTGGGAAAAGAAGCAGCTGCTGCAATGGCTGCTGTTGAAGCGCAGCAACAGAGGTTAACCCTCCAGCGTCTTATAGCTATGGTTGAAGCAGAGCGAGCATATCATCAAAGAGTACTCCAAATACTGGATCAGCTAGAGGGAGAGATGATATCAGAACGACAGCGGATTGAAGCCCCTCCTACACCAAGTGTGGATAACAGCATGCCACCACCTCCATCATACGAAGAAGTAAATGGTGTATATGCTTCTCAAACACATAATGGCTCAACAGATAGTATGGGTTACTTCTTAGGAGAGGTTTTGTTTCCCTACCATGCGGAGTCAGAAGTTGAATTGAATCTATCAGTTGGGGATTACATTGTTGTTAGAAAGGTGACCAACAATGGATGGGCTGAGGGCGAATGCAAAGGGAAAGCAGGTTGGTTTCCATTTGGTTACGTTGAAAGAAGGGAGCGAGTCCTTGCAAGTAAGGTAGCTGAAGTGTTTTGA 1008 0.4504 MVTDEVELQQHQKLEKLYISTRAGKHYQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGADNTCTSGSTLSRAALNYARARAQMEKERGSLLKALGTQVAEPLRAMVMGAPLEDARHLAQRYDRMRQEAEAQAIEVSKRQARVRETPGNTENAMKLEAAEAKLQDLKTNMAILGKEAAAAMAAVEAQQQRLTLQRLIAMVEAERAYHQRVLQILDQLEGEMISERQRIEAPPTPSVDNSMPPPPSYEEVNGVYASQTHNGSTDSMGYFLGEVLFPYHAESEVELNLSVGDYIVVRKVTNNGWAEGECKGKAGWFPFGYVERRERVLASKVAEVF 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03662 335 Coils Coil 184 204 - -
Vimu10g03662 335 Coils Coil 150 177 - -
Vimu10g03662 335 Gene3D Arfaptin homology (AH) domain/BAR domain 9 231 IPR027267 -
Vimu10g03662 335 SUPERFAMILY SH3-domain 229 323 IPR036028 GO:0005515
Vimu10g03662 335 SMART SH3_2 269 324 IPR001452 GO:0005515
Vimu10g03662 335 SUPERFAMILY BAR/IMD domain-like 11 222 IPR027267 -
Vimu10g03662 335 PANTHER SH3 DOMAIN-CONTAINING 3 323 - -
Vimu10g03662 335 Pfam Variant SH3 domain 273 321 IPR001452 GO:0005515
Vimu10g03662 335 Gene3D SH3 Domains 256 333 - -
Vimu10g03662 335 ProSiteProfiles Src homology 3 (SH3) domain profile. 266 325 IPR001452 GO:0005515
Vimu10g03662 335 Coils Coil 113 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03662 Vimu-Chr10 45759799 45763419 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03662 - - gmx:100783004 639.032
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03662 10 45759799 45763419 Vimu10g03662 10 45759799 45763419 ECH