Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03613 ATGGCTATCACTGCACTTTCTTCTTCAATTTTCCTCTTCCTTTCTCTATTTGCCATCACCTTCTCCCTCGCTAACTCTCAATCTTTCATAGGAGTAAACTATGGCCAGGTCGCCGACAACCTCCCGCCGCCGGACTCCACGGCCTCGCTTCTCAAATCCACATCCATCGGAAAAGTCCGCCTCTACGGCGCCGATCCCGCAATCATCAAGGCCCTCGCCAATTCCGGCATCGGAATCGTCATCGGCGCCGCCAACGGCGACATTCCGAGTCTGGCCTCCGATCCCAACGCGGCCACTCAGTGGGTTAACGCCAACGTGCTGCCCTACTACCCAGCCAGCAACATCACTCTCATCACTGTCGGCAACGAGATTCTAACCTTGGCCGACCAGAGTCTCGCCTCCCAGCTCGTGCCGGCGATGCGAAATCTCCAGAATGCCCTCAACGCGGCCTCTGTGAAGATCAAGGTCTCCACGGTGCACTCCATGGCCGTGTTGACTCAATCGGATCCGCCGTCGTCCGGGCTGTTCAACCCAGCGCTCCAGAACACGCTGAAGCAGTTGCTGACTGTTCTGAAGGATAACAAATCTCCGTTTACGATTAACCCGTACCCGTTCTTCGCTTACCAGAGCGACCCGAGACCCGAAACGCTGGCGTTTTGCCTCTTCCAACCGAACTCGGGGCGGGTGGACTCCGGCAACGGAAAGCTTTACACGAACATGTTCGATGCCCAGGTTGACGCTGTACACTCTGCTTTGACTTCGATGGGGTTCCAGGACGTGGAGATCGTGGTTGCTGAGACTGGATGGCCTTCACGTGGTGACAGTAACGAAGTAGGACCTGGTCTTGAAAATGCAAAGGCCTTTAACGGGAACCTGATTAATCATCTTAGATCATTGGTTGGGACACCTTTGATGCCTGGGAAGTCTGTGGATACTTACATTTTTGCACTCTATGATGAGGATCTCAAACCCGGTCCAGGATCTGAACGCGCGTTTGGGTTGTTCAAAACTGATGGTACCATGGCATACGATGCTGGCTTAGCCAAGTCTAGCCAGCAGGCTCCATCAACTAGTCCAAAAACTCCGGTTACTCCAGCACCCAACACTTCTGGATGGTGTGTACCCAAAACAGGAGTTTCTGATAATCAGTTGCAAGCCAATATTGACTACGCCTGTAGCCATGGCATAGATTGTGGACCAATTCAACCAGGAGGTCCTTGTTTTGAGCCTAACACAGTAGCATCCCATGCTGCATTTGCGATGAATCTCTACTACCAAACATCAGGCAAAAATCAATGGAACTGTGACTTCTCCCAATCAGCAACACTAACATCCCAAAATCCAAGTAAGTTCTCAATTAACACTCAATTTTTAATTTGA 1380 0.5159 MAITALSSSIFLFLSLFAITFSLANSQSFIGVNYGQVADNLPPPDSTASLLKSTSIGKVRLYGADPAIIKALANSGIGIVIGAANGDIPSLASDPNAATQWVNANVLPYYPASNITLITVGNEILTLADQSLASQLVPAMRNLQNALNAASVKIKVSTVHSMAVLTQSDPPSSGLFNPALQNTLKQLLTVLKDNKSPFTINPYPFFAYQSDPRPETLAFCLFQPNSGRVDSGNGKLYTNMFDAQVDAVHSALTSMGFQDVEIVVAETGWPSRGDSNEVGPGLENAKAFNGNLINHLRSLVGTPLMPGKSVDTYIFALYDEDLKPGPGSERAFGLFKTDGTMAYDAGLAKSSQQAPSTSPKTPVTPAPNTSGWCVPKTGVSDNQLQANIDYACSHGIDCGPIQPGGPCFEPNTVASHAAFAMNLYYQTSGKNQWNCDFSQSATLTSQNPSKFSINTQFLI 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03613 459 ProSitePatterns Glycosyl hydrolases family 17 signature. 260 273 IPR000490 GO:0004553|GO:0005975
Vimu10g03613 459 FunFam Glucan endo-1,3-beta-glucosidase 14 28 353 - -
Vimu10g03613 459 Gene3D - 367 457 - -
Vimu10g03613 459 SUPERFAMILY (Trans)glycosidases 30 345 IPR017853 -
Vimu10g03613 459 SMART X8_cls 371 454 IPR012946 -
Vimu10g03613 459 MobiDBLite consensus disorder prediction 347 369 - -
Vimu10g03613 459 Pfam X8 domain 372 442 IPR012946 -
Vimu10g03613 459 Gene3D Glycosidases 29 354 - -
Vimu10g03613 459 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 18 444 IPR044965 GO:0004553|GO:0005975
Vimu10g03613 459 FunFam glucan endo-1,3-beta-glucosidase 7 367 456 - -
Vimu10g03613 459 Pfam Glycosyl hydrolases family 17 30 344 IPR000490 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03613 Vimu-Chr10 45496134 45498843 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03613 24 449 Miscellaneous Gene Families AT2G16230 66.355 0.0 588
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03613 - - gmx:100778892 787.334
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03613 10 45496134 45498843 Vimu10g03613 10 45496134 45498843 ECH