Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03612 ATGGCTCAGCCGCTCGTGAAGAAGGACGATGACCGCGACGACGAAGCCGAGTATTCCCCCTTTATGGGAATTGAAAAGGGGTCTGTTCTTCAGGAGGCCAGAGTTTTTAATGACCCTCAACTAGATGCTAGGAGATGTTCACAGGTTATTACAAAACTCCTATACCTGCTGAATCAGGGAGAGACATTTACAAAGGTTGAGGCAACAGAAGTTTTCTTTGCTGTTACTAAGCTTTTCCAGTCTAAAGATATGGGATTAAGGAGAATGGTCTATTTGATGATAAAGGAGATATCTCCATCTGCAGACGAGGTTATCATCGTCACAAGCTCTCTAATGAAAGATATGAATAGCAAAATTGACATGTATAAGGCCAATGCTATTCGAGTGCTTTGTCGAATCACTGATGGAACACTCCTTTCCCAAATTGAGCGATGGAGCAATGAGGTTCAGGAAGCTGTTCAATCAAGGGCAGCCCTTGTACAATTTCATGCTCTGGCTTTGTTACATCAGATACGACAGAATGATCGATTGGCAGTAAGCAAGCTGGTTACCAGTTTGACAAGGGGGAGTGTTCGCTCACCTTTAGCACAGTGCCTTTTGATCCGTTACACTAGTCAGGTTATTTATGAATCAGGCAATAATACAGCGTCAGGGGAACGCCCCTTCTATGATTATCTTGAGAGTTGCCTTCGTCACAAGTCGGAGATGGTGATTTTTGAAGCTGCTAGAGCAATAACAGAGCTCAATGGTGTAACAAGTCGAGAACTAACTCCGGCAATTACTGTTCTTCAACTATTTTTAAGTTCTTCTAAGCCAGTGTTGAGATTTGCTGCTGTCCGCACCTTGAACAAGGTGGCAATGACACATCCAATGGCAGTCACCAACTGCAACATTGATATGGAAAGTTTAATCTCTGATCAGAACAGAAGCATTGCTACCCTTGCTATTACTACACTTTTGAAAACAGGAAATGAATCTAGTGTGGATCGTCTTATGAAGCAGATTACAAATTTCATGTCTGATATTGCAGATGAGTTCAAAATTGTTGTTGTTGAAGCAATAAGATCACTGTGCCTGAAGTTCCCTTTAAAATATCGATCTCTGATGAACTTCCTAAGTAATATTCTTAGGGAAGAAGGTGGTTTTGATTACAAGAAGGCAATTGTGGATTCAATTGTGATTCTCATTAGTGATATCCCTGATGCTAAGGAAGCTGGGTTGCTTCATCTTTGTGAGTTCATTGAAGATTGTGAGTTCACGTATTTGTCTACGCAGATACTTCACTTCCTGGGGATTGAAGGACCTAAAACATCAGACCCGAGCAAATACATTCGTTACATTTATAATAGAGTACATCTCGAGAATGCAATTGTTAGGGCAAGTGCCGTGAGTACACTGGCAAAATTTGGTGCTGCAGTTGATGCGTTGAAGCCCCGTATATTTGTTCTGCTAAGGCGATGTCTTTTTGACAGTGATGATGAGGTTCGTGATAGGGCAACACTTTACCTAAACACACTTGGAGGTGATGGTTCAGTTGTTGAGACTGATAAGGATGTAAAAGACTTCCTGTTTGGGTCATTTGATATCCCACTTGTTAATCTGGAGAATAGTTTGAAAAATTATGAGCCTTCAGAAGAAGCTTTTGACATTAACTTTGTGCCCAAGGAGGTCAGGTCCCAGCCACTTGCAGAAAAGAAAGCCCCTGGTAAAAAGCCATCTGGTTTGGGTGCTCCTCCAAGTGGTCCCCTATCAACTGTAGATGTATATGAGAAGATGCTTTTGACCATTCCAGAGTGTGCAAACTTTGGGAAGCTTTTCAAGTCCTCAGCACCTGTGGAGCTCACTGAAGCTGAGACGGAATATGCTGTTAATGTCATTAAACACATTTTTGATAGGCATGTTGTGTTCCAGTACAACTGCACGAACACAATAGCTGAGCAATTATTGGAAGATGTTATTGTGAATGTGGATGCTTCTGAAGCAGAAGAATTCTCAGAGGTGTTCTCCAAGCCTATCAGGTCTCTTCCTTATGATTCACCTGGACAGACTTTTGTGGCATTTGAGAAGCCAGAGGGAGTATCAGCAGTTGGAAAATTTTCGAACGTTCTGAAATTTATTGTTAAAGAGGTTGACCCTACCACTGGCGAGGCTGAAGATGACGGTGTTGAAGATGAATACCAGCTGGAGGATCTGGAGGTTGTTGCTGCAGATTATGTGTTGAAAGTGGGGGTGTCTAATTTTAGGAATGCTTGGGAAAGCTTGGGTCCTGATTTTGAGCGAGTGGATGAGTACGGTCTTGGTCCAAGAGAGAGCTTGGCTGAAGCTGTAAATACTGTTATCAACCTGCTTGGGTTGCAGCCCTGCGAGGGAACAGAGGAGGTTCCTCCCAATTCAAGATCACACACATGTTTGTTGTCAGGTGTATTCATAGGGAATGTAAAGGTGCTTGTACGGTTGTCTTTTGGACTTGATGGTCCGAAGGATGTTGCAATGAAATTGTCTGTCAGATCGGAGGATGAAACTGTCAGCGATGCCATTCATGAGATTGTCGCAAGCGGCTAG 2562 0.4278 MAQPLVKKDDDRDDEAEYSPFMGIEKGSVLQEARVFNDPQLDARRCSQVITKLLYLLNQGETFTKVEATEVFFAVTKLFQSKDMGLRRMVYLMIKEISPSADEVIIVTSSLMKDMNSKIDMYKANAIRVLCRITDGTLLSQIERWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSKLVTSLTRGSVRSPLAQCLLIRYTSQVIYESGNNTASGERPFYDYLESCLRHKSEMVIFEAARAITELNGVTSRELTPAITVLQLFLSSSKPVLRFAAVRTLNKVAMTHPMAVTNCNIDMESLISDQNRSIATLAITTLLKTGNESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEGGFDYKKAIVDSIVILISDIPDAKEAGLLHLCEFIEDCEFTYLSTQILHFLGIEGPKTSDPSKYIRYIYNRVHLENAIVRASAVSTLAKFGAAVDALKPRIFVLLRRCLFDSDDEVRDRATLYLNTLGGDGSVVETDKDVKDFLFGSFDIPLVNLENSLKNYEPSEEAFDINFVPKEVRSQPLAEKKAPGKKPSGLGAPPSGPLSTVDVYEKMLLTIPECANFGKLFKSSAPVELTEAETEYAVNVIKHIFDRHVVFQYNCTNTIAEQLLEDVIVNVDASEAEEFSEVFSKPIRSLPYDSPGQTFVAFEKPEGVSAVGKFSNVLKFIVKEVDPTTGEAEDDGVEDEYQLEDLEVVAADYVLKVGVSNFRNAWESLGPDFERVDEYGLGPRESLAEAVNTVINLLGLQPCEGTEEVPPNSRSHTCLLSGVFIGNVKVLVRLSFGLDGPKDVAMKLSVRSEDETVSDAIHEIVASG 853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03612 853 Pfam Adaptin N terminal region 141 506 IPR002553 GO:0006886|GO:0016192|GO:0030117
Vimu10g03612 853 PANTHER COATOMER SUBUNIT GAMMA 1 144 IPR017106 -
Vimu10g03612 853 PIRSF Gamma-COP 7 144 IPR017106 -
Vimu10g03612 853 PIRSF Gamma-COP 141 851 IPR017106 -
Vimu10g03612 853 FunFam Coatomer subunit gamma 299 507 - -
Vimu10g03612 853 SUPERFAMILY Clathrin adaptor appendage domain 582 737 IPR013041 -
Vimu10g03612 853 SUPERFAMILY Subdomain of clathrin and coatomer appendage domain 738 850 IPR009028 GO:0006886|GO:0016192|GO:0030117
Vimu10g03612 853 Gene3D - 23 141 IPR011989 -
Vimu10g03612 853 Gene3D - 142 282 IPR011989 -
Vimu10g03612 853 MobiDBLite consensus disorder prediction 560 580 - -
Vimu10g03612 853 Gene3D - 735 851 IPR012295 -
Vimu10g03612 853 Gene3D - 301 518 IPR011989 -
Vimu10g03612 853 FunFam Coatomer subunit gamma 581 734 - -
Vimu10g03612 853 SUPERFAMILY ARM repeat 32 527 IPR016024 -
Vimu10g03612 853 Pfam Coatomer gamma subunit appendage platform subdomain 589 733 IPR013040 GO:0005198|GO:0006886|GO:0016192|GO:0030126
Vimu10g03612 853 Pfam Coatomer subunit gamma-1 C-terminal appendage platform 736 850 IPR032154 -
Vimu10g03612 853 Gene3D Coatomer, gamma subunit, appendage domain 582 734 IPR037067 GO:0005198|GO:0006886|GO:0016192|GO:0030126
Vimu10g03612 853 FunFam Coatomer subunit gamma 735 851 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03612 Vimu-Chr10 45487747 45493878 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03612 K17267 - gmx:100814149 1531.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03612 10 45487747 45493878 Vimu10g03612 10 45487747 45493878 ECH