Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03536 ATGCATCTCAAGTTGATGGGAAGAGCCTCTGTTGCTGTTCTTCTCTTATCTCTTCTTGCTATTTCTCACTTTTCTGGGGCCGAAGATCCCTACAGATTCTTCAACTGGAATGTCACTTATGGCGACATTTTTCCTCTTGGTGTTCGCCAAAGGGGAATCTTAATCAACGGACAATTCCCAGGTCCAGATATTCATTCTGTTACCAACGACAACCTCATCATCAATGTCTTCAATAGTTTGGATGAACCTTTTCTTCTTTCCTGGAACGGAATTCAGCAGAGAAGAAACTCGTTCGAAGATGGTGTTTTTGGAACAACGTGTCCGATTCCACCAGGAAAGAATTTCACTTACATTCTTCAAGTGAAGGATCAAATTGGAAGCTTTTATTACTTTCCATCTCTTGCGTTTCACAAAGCTGCCGGTGGTTTTGGTGGCATCAGGATTCTGAGCAGACCAAGAATTCCGGTGCCATTTCCCGATCCTGCCGGCGATTACACTGTTCTCATTGGAGATTGGTTCAAATCCAACCACACGACTCTGAAAGCTCATCTTGATAACGGTAAGAAGCTTCCTTTACCCGATGGAATACTTATCAATGGTCGTGGACCTAATGGAGTGGCTTTCAACGTTGAACAAGGAAAAACTTACAGACTTAGAATATCAAATGTGGGGCTGCAACATTCCCTTAACTTTCGCATTCAGAATCACAAAATGAAGCTGGTGGAAGTGGAAGGAACACACACTGTACAAACTACGTACTCCTCTCTTGATGTTCATGTGGGACAATCTTATTCAGTGTTGGTAACTGCAGATCAACCCGCTCAAGACTATTACATTGTGGCTTCATCACGATTCTCCTCCAAGGTTCTCACCACCACTGCAGTTCTTCGCTATAGCAACTCTGCAGGCCCAGTATCAGGCCCACCCCCTGGTGGGCCTACGATCCAGATTGATTGGTCCTTGAATCAGGCCCGCTCAATCAGGACTAACCTTACAGCAAGTGGACCAAGACCGAACCCGCAAGGATCGTATCATTACGGTCTGATAAACACGAGCAGGACCATCGTACTAGCGAGTTCTGCTGGTCAAGTGAATGGGAAACAAAGATACGCACTGAACAGCGTGTCTTATGTTGCCCCAGACACCCCTCTCAAGCTCGCAGATTACTTCAAAATCTCTGGCGTTTTCCGCCCCGGAAGCATATCTGACAGACCCACTGGTGGTGGCATCTACCTTGACACATCCGTTTTACAAACTGACTTCAGAGCTTTTGTGGAAATTGTCTTCCAAAACAACGAGAACATCGTTCAAAGCTATCATCTCGATGGCTACTCTTTCTTTGTCGTTGGCATGGATGGCGGACAGTGGACACCTGCTAGCAGGAACCAATACAATCTCCACGATGCAGTTTCACGTTGTACCACACAGGTATATCCAATGTCATGGACTGCTATTTATGTTGCCCTTGACAACGTGGGAATGTGGAATTTGAGGTCTGAGTTTTGGGCACGACAATACCTTGGGCAACAGTTATATGTGCGCGTTTATACATCATCAACCTCAATCAGAGACGAGTTTCCTGTTCCAAAGAATGCAATTCTTTGTGGCAGGGCGAGTGGTAGACACACGCGACCACTCTGA 1641 0.4576 MHLKLMGRASVAVLLLSLLAISHFSGAEDPYRFFNWNVTYGDIFPLGVRQRGILINGQFPGPDIHSVTNDNLIINVFNSLDEPFLLSWNGIQQRRNSFEDGVFGTTCPIPPGKNFTYILQVKDQIGSFYYFPSLAFHKAAGGFGGIRILSRPRIPVPFPDPAGDYTVLIGDWFKSNHTTLKAHLDNGKKLPLPDGILINGRGPNGVAFNVEQGKTYRLRISNVGLQHSLNFRIQNHKMKLVEVEGTHTVQTTYSSLDVHVGQSYSVLVTADQPAQDYYIVASSRFSSKVLTTTAVLRYSNSAGPVSGPPPGGPTIQIDWSLNQARSIRTNLTASGPRPNPQGSYHYGLINTSRTIVLASSAGQVNGKQRYALNSVSYVAPDTPLKLADYFKISGVFRPGSISDRPTGGGIYLDTSVLQTDFRAFVEIVFQNNENIVQSYHLDGYSFFVVGMDGGQWTPASRNQYNLHDAVSRCTTQVYPMSWTAIYVALDNVGMWNLRSEFWARQYLGQQLYVRVYTSSTSIRDEFPVPKNAILCGRASGRHTRPL 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03536 546 SUPERFAMILY Cupredoxins 158 338 IPR008972 -
Vimu10g03536 546 CDD CuRO_2_AAO_like_1 163 298 IPR034271 -
Vimu10g03536 546 CDD CuRO_1_AAO_like_1 33 148 IPR034273 GO:0005507
Vimu10g03536 546 FunFam Monocopper oxidase-like protein 348 545 - -
Vimu10g03536 546 CDD CuRO_3_AAO_like_1 380 500 IPR034275 GO:0005507
Vimu10g03536 546 SUPERFAMILY Cupredoxins 348 537 IPR008972 -
Vimu10g03536 546 Pfam Multicopper oxidase 164 300 IPR001117 -
Vimu10g03536 546 Gene3D - 162 337 IPR008972 -
Vimu10g03536 546 Pfam Multicopper oxidase 38 151 IPR011707 GO:0005507
Vimu10g03536 546 Pfam Multicopper oxidase 382 518 IPR011706 GO:0005507|GO:0016491
Vimu10g03536 546 Gene3D - 347 542 IPR008972 -
Vimu10g03536 546 Gene3D - 31 152 IPR008972 -
Vimu10g03536 546 FunFam L-ascorbate oxidase homolog 31 152 - -
Vimu10g03536 546 PANTHER MULTI-COPPER OXIDASE 50 515 IPR045087 -
Vimu10g03536 546 FunFam Monocopper oxidase-like protein 162 336 - -
Vimu10g03536 546 SUPERFAMILY Cupredoxins 27 178 IPR008972 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03536 Vimu-Chr10 44959856 44965700 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03536 - - gmx:100815570 1028.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03536 10 44959856 44965700 Vimu10g03536 10 44959856 44965700 ECH