Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03530 ATGTCTACACTGGTCTCTGAACCATTCCAAGCCTTGAGCTTGAAGTCTGTTTTCAGTGCTTCAGGCATTAAGGGCAAACGAGTCACTGCATTGTCACCACAAGGAAATGCCCTCACTGATTTCATTCAAACAGCCATTGCCGAAAAACCAGACATTGACTCTCCATTCGGCGTACTAGATTTGGGGGTCGTTATGGGCTTGTTGGAAAAATGGACCACCAAGCTTCCCACGGTCCGGCCCTTCTACGCCGTCAAGTGCAACCCCAACCTCTCCCTCATCGGGGCTCTCGCCGCCCTAGGCACCAGCTTCGACTGTGCCAGCAAAGCCGAGATTGAAGCCATTTTATCCCTTGGAGTCTCACCCGACCGCATCATCTACGCCAACCCTTGCAAATCCGAATCCCACATCGAATACGCCGCCACCGTAGGCGTCAACGTCACAACCTACGACTCTAAAGACGAGGTAGAAAAGATACGCAAATGCCACCCCACGTGCGAGTTGCTCCTCCGCATCAGGCCGCCGCAAGAAAGTGGAGCGCGCACCAGCTTGGGCCTCAAATACGGCGCGCTTCCCGAAGAAGTCCCGGAGCTTCTGAGCGTGGCTCACGCCGCCGGACTCAAAGTGACGGGAGTGTCCTTCCACATCGGAAGTGGTGGAGGCGACGCGCAAGCTTACAAAGGAGCCATATCTGCGGCAAAGTCCGTCTTCGATATGGCTTCCCTGCTGGGCATGCCGAGAATGCGCGTTCTCGACATCGGCGGCGGCTTCACCTCCGGGCCGGAGTTCGACGTCGCGGCTATGCAAATCAACGCGGCGATTCAAGGCAGCTTCGAGAATAAAGAGGAGCTGGTGGTTATTGGCGAGCCGGGTCGTTACTTTGCAGAAACGGCTTTCACGTTGGCCACGAAGGTTATCGGGAAACGCCTACCGTCACGTGCATGCCACTCGCCTGCACCTCGAAACCTGAGAACCCTTTTTGCAGGGATTCCAAAACCTACTCTTCCACCGTGTTTGGACCAACCTGCGATTCACTTGACACTGTTCTAA 1047 0.554 MSTLVSEPFQALSLKSVFSASGIKGKRVTALSPQGNALTDFIQTAIAEKPDIDSPFGVLDLGVVMGLLEKWTTKLPTVRPFYAVKCNPNLSLIGALAALGTSFDCASKAEIEAILSLGVSPDRIIYANPCKSESHIEYAATVGVNVTTYDSKDEVEKIRKCHPTCELLLRIRPPQESGARTSLGLKYGALPEEVPELLSVAHAAGLKVTGVSFHIGSGGGDAQAYKGAISAAKSVFDMASLLGMPRMRVLDIGGGFTSGPEFDVAAMQINAAIQGSFENKEELVVIGEPGRYFAETAFTLATKVIGKRLPSRACHSPAPRNLRTLFAGIPKPTLPPCLDQPAIHLTLF 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03530 348 PANTHER ARGININE/DIAMINOPIMELATE/ORNITHINE DECARBOXYLASE 32 311 IPR002433 GO:0006596
Vimu10g03530 348 Pfam Pyridoxal-dependent decarboxylase, pyridoxal binding domain 68 294 IPR022644 GO:0003824
Vimu10g03530 348 ProSitePatterns Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 82 100 IPR022653 -
Vimu10g03530 348 PRINTS Ornithine decarboxylase signature 80 107 IPR002433 GO:0006596
Vimu10g03530 348 PRINTS Ornithine decarboxylase signature 124 148 IPR002433 GO:0006596
Vimu10g03530 348 PRINTS Ornithine decarboxylase signature 154 176 IPR002433 GO:0006596
Vimu10g03530 348 PRINTS Ornithine decarboxylase signature 54 78 IPR002433 GO:0006596
Vimu10g03530 348 CDD PLPDE_III_ODC 53 308 - -
Vimu10g03530 348 SUPERFAMILY PLP-binding barrel 60 295 IPR029066 -
Vimu10g03530 348 FunFam Ornithine decarboxylase 64 293 - -
Vimu10g03530 348 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 205 218 IPR000183 GO:0003824
Vimu10g03530 348 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 102 114 IPR000183 GO:0003824
Vimu10g03530 348 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 82 100 IPR000183 GO:0003824
Vimu10g03530 348 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 285 304 IPR000183 GO:0003824
Vimu10g03530 348 Gene3D Alanine racemase 62 293 IPR029066 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03530 K01581 - gmx:547682 504.597
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03530 10 44892896 44894018 Vimu10g03530 10 44892896 44894018 ECH