Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03522 ATGGCTTCTATCAAATCATGTCCACGGTTGCGCCACTCCCTCTCACCGCTCCTACCCTGCACTTTCAAGCAACACTGTTCTTCGGCTTCACTTCCCGAACCGCTTCTCCAACCTTATTCAAACGACACATCCCAAATTCCAAACCTATCCTCCGAGGAAACCACCTTAGCAGACAAACTCCACGCCGCCATCAAAGAACACCACCGCAAACACCCCACACCAAATCCCAATGCCCCGCCCCCTGCACCCAATCTTACCATCCCCGACCTCTCCCTTGACTTCTCCGCGCTCTCCGCCGCTCACACACTCTCCCCCGCCGTCGCCCGCCACGTCATCGAGAAATGCGGCGCTGTCCGCCACGGCATCCCCTTCCTCCAATCCCTCGCGTTCTTCAACTGGGCCACTGCCCTTGACGGATTTCCCCCCTCGCCAGAGCCCTACAACGAGATGGTCGACCTCGCCGGAAAGCTGAGACATTTCGACCTCGCGTGGCACGTGATCGACCTTATGAAGACACGCGGCGTCGAAATCAGCGCTCACACGTTCTCTTCTCTCGTCCGCCGCTACGTGAGGGCAGGATTACCTGCCGAGGCGGTCCACGCTTTCAACCGCATGGAGGACTATGGCTGCACTCCCGACAAGGTTGCGTTTTCAATTGTGATTAGTAGCTTGTGTAAAAAAAGAAGGGCAAATGAGGCTCAATCGTTTTTTGAGAGTCTCAAGCATAAGTTTGAGCCTGATGTTTTAGTTTACACTAGTTTGGTTTATGGGTGGTGTCGTGCTGGTAACATATCTAAGGCTGAAGAGGTGTTTAATGATATGAAGATGGCTGGGATTAAGCCTAATGTTTATACTTACAGCACTGTGATTGATTCGTTGTGCCGATGTGGGCAAATTACGCGTGCTCATGATGTTTTCGCGGAGATGATTGATGCAGGGTGTGATCCTAATGCTGTTACTTTCAACAGTTTGATGCGGGTTCATGTTAAGGCTGGGAGGACTGAGAAGGTATTGCAGGTTTACAATCAGATGAAGAGGCTAGGTTGTCCTGCAGATACCATTAGCTACAATTTCATCATTGAGAGTCATTGCAGGGATGAGAATCTTGATGAGGCTGTGAAGATTCTCAATTTGATGGTGAAGAAAGGGGTTGCTCCTAATGCGTCCACTTTCAATTGTGTTTTTGGATGCATAGCTAAGTTGCATGATGTGAATGGTGCGCACAGGATGTATGCTAGAATGAAGGAGCTGAAGTGCCTGCCCAATACGTTGACTTATAATATATTGATGAGGATGTTTGCTGAGTCAAGATCTACTGATATGGTTCTGAAAATGAAGAAGGAAATGGACGAGAATCAGGTTGAACCTAATGTAAACACTTACCGGATTTTGATTTCGATGTTTTGTGAAATGAAGCACTGGAACAATGCTTACAAGTTAATGAAGGAAATGGTTGAAGAAAAATGCCTAAAACCCAATCTATCAGTTTATGGAACAGTTCTGGAGCTGCTCAGAAACGCTGGACAGTTGAAAAAGCATGAAGAGTTGGTGGAGAAGATGGTTTCGAGGGGATTCGTCACTCGCTCTTTGTAA 1593 0.4809 MASIKSCPRLRHSLSPLLPCTFKQHCSSASLPEPLLQPYSNDTSQIPNLSSEETTLADKLHAAIKEHHRKHPTPNPNAPPPAPNLTIPDLSLDFSALSAAHTLSPAVARHVIEKCGAVRHGIPFLQSLAFFNWATALDGFPPSPEPYNEMVDLAGKLRHFDLAWHVIDLMKTRGVEISAHTFSSLVRRYVRAGLPAEAVHAFNRMEDYGCTPDKVAFSIVISSLCKKRRANEAQSFFESLKHKFEPDVLVYTSLVYGWCRAGNISKAEEVFNDMKMAGIKPNVYTYSTVIDSLCRCGQITRAHDVFAEMIDAGCDPNAVTFNSLMRVHVKAGRTEKVLQVYNQMKRLGCPADTISYNFIIESHCRDENLDEAVKILNLMVKKGVAPNASTFNCVFGCIAKLHDVNGAHRMYARMKELKCLPNTLTYNILMRMFAESRSTDMVLKMKKEMDENQVEPNVNTYRILISMFCEMKHWNNAYKLMKEMVEEKCLKPNLSVYGTVLELLRNAGQLKKHEELVEKMVSRGFVTRSL 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03522 530 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 422 456 IPR002885 -
Vimu10g03522 530 Gene3D Tetratricopeptide repeat domain 238 312 IPR011990 GO:0005515
Vimu10g03522 530 SUPERFAMILY TPR-like 140 417 IPR011990 GO:0005515
Vimu10g03522 530 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 493 527 IPR002885 -
Vimu10g03522 530 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 387 421 IPR002885 -
Vimu10g03522 530 NCBIfam pentatricopeptide repeat 147 178 IPR002885 -
Vimu10g03522 530 NCBIfam pentatricopeptide repeat 425 458 IPR002885 -
Vimu10g03522 530 NCBIfam pentatricopeptide repeat 284 318 IPR002885 -
Vimu10g03522 530 NCBIfam pentatricopeptide repeat 390 423 IPR002885 -
Vimu10g03522 530 NCBIfam pentatricopeptide repeat 354 388 IPR002885 -
Vimu10g03522 530 NCBIfam pentatricopeptide repeat 460 493 IPR002885 -
Vimu10g03522 530 NCBIfam pentatricopeptide repeat 319 352 IPR002885 -
Vimu10g03522 530 NCBIfam pentatricopeptide repeat 250 283 IPR002885 -
Vimu10g03522 530 NCBIfam pentatricopeptide repeat 180 213 IPR002885 -
Vimu10g03522 530 PANTHER OS03G0856100 PROTEIN 260 525 - -
Vimu10g03522 530 Pfam PPR repeat family 185 226 IPR002885 -
Vimu10g03522 530 Pfam PPR repeat family 352 397 IPR002885 -
Vimu10g03522 530 Pfam PPR repeat family 246 295 IPR002885 -
Vimu10g03522 530 Pfam PPR repeat family 421 469 IPR002885 -
Vimu10g03522 530 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 352 386 IPR002885 -
Vimu10g03522 530 Gene3D Tetratricopeptide repeat domain 98 232 IPR011990 GO:0005515
Vimu10g03522 530 Gene3D Tetratricopeptide repeat domain 313 403 IPR011990 GO:0005515
Vimu10g03522 530 MobiDBLite consensus disorder prediction 66 85 - -
Vimu10g03522 530 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 317 351 IPR002885 -
Vimu10g03522 530 Gene3D Tetratricopeptide repeat domain 404 529 IPR011990 GO:0005515
Vimu10g03522 530 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 247 281 IPR002885 -
Vimu10g03522 530 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 282 316 IPR002885 -
Vimu10g03522 530 Pfam PPR repeat 319 349 IPR002885 -
Vimu10g03522 530 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 143 177 IPR002885 -
Vimu10g03522 530 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 213 243 IPR002885 -
Vimu10g03522 530 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 457 491 IPR002885 -
Vimu10g03522 530 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 178 212 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03522 Vimu-Chr10 44845665 44847866 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03522 169 526 Glycosyltransferase AT1G05670 20.888 1.53e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03522 - - gmx:100800850 910.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03522 10 44845665 44847866 Vimu10g03522 10 44845665 44847866 ECH